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GrainGenes Locus Report: POPA3_0420

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Locus
POPA3_0420  [ Marker Report ]
Type
SNP
Synonym
Other name12_30420
BOPA2_12_30420
Synonym12_30420
PSR130
Chromosome
2H
Chromosome Arm
2HS
Map
Hordeum-OPA-2009-2H39.1
Hordeum-OPA123-2008-2H39.1
Hordeum-OPAConsensus-2011-2H40.69
Hordeum-OWB-OPA2008-2H55.214
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_15357
i_12_30420
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 3_0420
Marker name in barley OPA1 = 12_30420
Original SNP name = U32_2213_658
Most representative HarvEST:Barley Assembly #32 Unigene = 2213
Most representative HarvEST:Barley Assembly #35 Unigene = 15357
HarvEST Unigene 35 Probe Set = EBro07_SQ002_B04_s_at
Unigene 35 Rice Locus = LOC_Os07g47640
Description for best rice BLAST hit to Unigene 35 member = ultraviolet-B-repressible protein, putative, expressed; E value = 6E-33
Marker name in barley Pilot OPA3 = 3_0420
Marker name in barley OPA2 = 12_30420
Description for best rice BLAST hit to Unigene 35 member = protein ultraviolet-B-repressible protein, putative, expressed; E value = 6E-33
BLAST hit in the rice genome = ultraviolet-B-repressible protein, putative, expressed