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GrainGenes Locus Report: POPA3_0504

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Locus
POPA3_0504  [ Marker Report ]
Type
SNP
Probe
HAR35_16073
i_12_30504
Synonym
Other name12_30504
BOPA2_12_30504
Synonym12_30504
CDO484
Chromosome
5H
Chromosome Arm
5HL
Map
Hordeum-OPA-2009-5H182.16
Hordeum-OPA123-2008-5H182.16
Hordeum-OPAConsensus-2011-5H173.5
Hordeum-OWB-OPA2008-5H225.842
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0640L24
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 13 ]
Marker name in barley Pilot OPA1 = 3_0504
Marker name in barley OPA1 = 12_30504
Original SNP name = U32_3706_309
Most representative HarvEST:Barley Assembly #32 Unigene = 3706
Most representative HarvEST:Barley Assembly #35 Unigene = 16073
HarvEST Unigene 35 Probe Set = Contig5158_at; Contig5161_s_at
Unigene 35 Rice Locus = LOC_Os03g62640
Description for best rice BLAST hit to Unigene 35 member = RNA-binding protein Luc7-like 2, putative, expressed; E value = 1E-40
Marker name in barley Pilot OPA3 = 3_0504
Marker name in barley OPA2 = 12_30504
HarvEST Unigene 35 Probe Set = Contig5158_at, Contig5161_s_at
Description for best rice BLAST hit to Unigene 35 member = protein RNA-binding protein Luc7-like 2, putative, expressed; E value = 1E-40
BLAST hit in the rice genome = RNA-binding protein Luc7-like 2, putative, expressed

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