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GrainGenes Locus Report: POPA3_0533

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Locus
POPA3_0533  [ Marker Report ]
Type
SNP
Synonym
Other name12_30533
BOPA2_12_30533
Synonym12_30533
BCD1140
Chromosome
5H
Chromosome Arm
5HL
Map
Hordeum-OPA-2009-5H100.28
Hordeum-OPA123-2008-5H100.28
Hordeum-OPAConsensus-2011-5H86.74
Hordeum-OWB-OPA2008-5H113.773
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0306H06
Probe
HAR35_2104
i_12_30533
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 13 ]
Marker name in barley Pilot OPA1 = 3_0533
Marker name in barley OPA1 = 12_30533
Original SNP name = U32_4201_1988
Most representative HarvEST:Barley Assembly #32 Unigene = 4201
Most representative HarvEST:Barley Assembly #35 Unigene = 2104
HarvEST Unigene 35 Probe Set = Contig5833_at; Contig5833_s_at; Contig5834_at
Unigene 35 Rice Locus = LOC_Os09g31970
Description for best rice BLAST hit to Unigene 35 member = 3-hydroxy-3-methylglutaryl-coenzyme A reductase 3, putative, expressed; E value = 0
Marker name in barley Pilot OPA3 = 3_0533
Marker name in barley OPA2 = 12_30533
HarvEST Unigene 35 Probe Set = Contig5833_at, Contig5833_s_at, Contig5834_at
Description for best rice BLAST hit to Unigene 35 member = protein 3-hydroxy-3-methylglutaryl-coenzyme A reductase 3, putative, expressed; E value = 0
BLAST hit in the rice genome = 3-hydroxy-3-methylglutaryl-coenzyme A reductase 3, putative, expressed