Query (optional)   in Class  

GrainGenes Locus Report: POPA3_0557

Locus
POPA3_0557  [ Marker Report ]
Type
SNP
Synonym
Other name12_30557
BOPA2_12_30557
Synonym12_30557
Chromosome
2H
Chromosome Arm
2HS
Map
Hordeum-OPA-2009-2H56.99
Hordeum-OPA123-2008-2H56.99
Hordeum-OPAConsensus-2011-2H62.85
Hordeum-OWB-OPA2008-2H71.665
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0675C20
Probe
HAR35_16849
i_12_30557
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 12 ]
Marker name in barley Pilot OPA1 = 3_0557
Marker name in barley OPA1 = 12_30557
Original SNP name = U32_4648_330
Most representative HarvEST:Barley Assembly #32 Unigene = 4648
Most representative HarvEST:Barley Assembly #35 Unigene = 16849
HarvEST Unigene 35 Probe Set = Contig6399_at
Unigene 35 Rice Locus = LOC_Os07g39560
Description for best rice BLAST hit to Unigene 35 member = RNA-binding protein, putative, expressed; E value = 0
Marker name in barley Pilot OPA3 = 3_0557
Marker name in barley OPA2 = 12_30557
Description for best rice BLAST hit to Unigene 35 member = protein RNA-binding protein, putative, expressed; E value = 0
BLAST hit in the rice genome = RNA-binding protein, putative, expressed