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GrainGenes Locus Report: POPA3_0584

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Locus
POPA3_0584  [ Marker Report ]
Type
SNP
Synonym
Other name12_30584
BOPA2_12_30584
Synonym12_30584
Chromosome
4H
Chromosome Arm
4HL
Map
Hordeum-OPA-2009-4H96.59
Hordeum-OPA123-2008-4H96.59
Hordeum-OPAConsensus-2011-4H105.17
Hordeum-OWB-OPA2008-4H96.363
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0279B09
Probe
HAR35_2513
i_12_30584
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 14 ]
Marker name in barley Pilot OPA1 = 3_0584
Marker name in barley OPA1 = 12_30584
Original SNP name = U32_5144_1710
Most representative HarvEST:Barley Assembly #32 Unigene = 5144
Most representative HarvEST:Barley Assembly #35 Unigene = 2513
HarvEST Unigene 35 Probe Set = Contig7177_at; HU05P16u_s_at
Unigene 35 Rice Locus = LOC_Os01g16180
Description for best rice BLAST hit to Unigene 35 member = MT-A70 family protein, expressed; E value = 0
Marker name in barley Pilot OPA3 = 3_0584
Marker name in barley OPA2 = 12_30584
Original SNP name = ABC06018_60
HarvEST Unigene 35 Probe Set = Contig7177_at, HU05P16u_s_at
Description for best rice BLAST hit to Unigene 35 member = protein MT-A70 family protein, expressed; E value = 0
BLAST hit in the rice genome = MT-A70 family protein, expressed