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GrainGenes Locus Report: POPA3_0611

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Locus
POPA3_0611  [ Marker Report ]
Type
SNP
Synonym
Other name12_30611
BOPA2_12_30611
Synonym12_30611
Chromosome
5H
Chromosome Arm
5HL
Map
Barley, 2012 9KSNP 5H119
Hordeum-OPA-2009-5H129.41
Hordeum-OPA123-2008-5H129.41
Hordeum-OPAConsensus-2011-5H121.67
Hordeum-OWB-OPA2008-5H154.045
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Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_17556
i_12_30611
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 12 ]
Marker name in barley Pilot OPA1 = 3_0611
Marker name in barley OPA1 = 12_30611
Original SNP name = U32_5714_470
Most representative HarvEST:Barley Assembly #32 Unigene = 5714
Most representative HarvEST:Barley Assembly #35 Unigene = 17556
HarvEST Unigene 35 Probe Set = Contig8094_at
Unigene 35 Rice Locus = LOC_Os03g44484
Marker name in barley Pilot OPA3 = 3_0611
Marker name in barley OPA2 = 12_30611
Original SNP name = U32_5287_707
Description for best rice BLAST hit to Unigene 35 member = protein DNA-directed RNA polymerase II 135 kDa polypeptide, putative, expressed; E value = 1E-43
BLAST hit in the rice genome = DNA-directed RNA polymerase II 135 kDa polypeptide, putative, expressed