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GrainGenes Locus Report: POPA3_0649

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Locus
POPA3_0649  [ Marker Report ]
Type
SNP
Synonym
Other name12_30649
BOPA2_12_30649
Synonym12_30649
Chromosome
1H
Chromosome Arm
1HL
Map
Hordeum-OPA-2009-1H128.14
Hordeum-OPA123-2008-1H128.14
Hordeum-OPAConsensus-2011-1H132.16
Hordeum-OWB-OPA2008-1H143.134
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0695E14
Probe
HAR35_3458
i_12_30649
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 13 ]
Marker name in barley Pilot OPA1 = 3_0649
Marker name in barley OPA1 = 12_30649
Original SNP name = U32_6455_90
Most representative HarvEST:Barley Assembly #32 Unigene = 6455
Most representative HarvEST:Barley Assembly #35 Unigene = 3458
HarvEST Unigene 35 Probe Set = Contig8605_at; Contig8605_s_at; HV_CEa0011J09r2_at
Unigene 35 Rice Locus = LOC_Os07g17330
Description for best rice BLAST hit to Unigene 35 member = B12D protein, expressed; E value = 1E-36
Marker name in barley Pilot OPA3 = 3_0649
Marker name in barley OPA2 = 12_30649
HarvEST Unigene 35 Probe Set = Contig8605_at, Contig8605_s_at, HV_CEa0011J09r2_at
Description for best rice BLAST hit to Unigene 35 member = protein B12D protein, expressed; E value = 1E-36
BLAST hit in the rice genome = B12D protein, expressed