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GrainGenes Locus Report: POPA3_0707

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Locus
POPA3_0707  [ Marker Report ]
Type
SNP
Synonym
Other name12_30707
BOPA2_12_30707
Synonym12_30707
Chromosome
5H
Chromosome Arm
5HS
Map
Barley, 2012 9KSNP 5H40
Hordeum-OPA-2009-5H43.14
Hordeum-OPA123-2008-5H43.14
Hordeum-OPAConsensus-2011-5H36.72
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Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0133I23
Probe
HAR35_3589
i_12_30707
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 3_0707
Marker name in barley OPA1 = 12_30707
Original SNP name = U32_7514_744
Most representative HarvEST:Barley Assembly #32 Unigene = 7514
Most representative HarvEST:Barley Assembly #35 Unigene = 3589
HarvEST Unigene 35 Probe Set = Contig10220_s_at
Unigene 35 Rice Locus = LOC_Os12g41700
Description for best rice BLAST hit to Unigene 35 member = 18S subunit ribosomal protein, putative, expressed; E value = 4E-83
Marker name in barley Pilot OPA3 = 3_0707
Marker name in barley OPA2 = 12_30707
Description for best rice BLAST hit to Unigene 35 member = protein 18S subunit ribosomal protein, putative, expressed; E value = 4E-83
BLAST hit in the rice genome = 18S subunit ribosomal protein, putative, expressed