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GrainGenes Locus Report: POPA3_0772

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Locus
POPA3_0772  [ Marker Report ]
Type
SNP
Synonym
Other name12_30772
BOPA2_12_30772
Synonym12_30772
Chromosome
2H
Chromosome Arm
2HS
Map
Hordeum-OPA-2009-2H58.9
Hordeum-OPA123-2008-2H58.9
Hordeum-OPAConsensus-2011-2H66.2
Hordeum-OWB-OPA2008-2H72.752
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0232P12
Probe
HAR35_4920
i_12_30772
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 3_0772
Marker name in barley OPA1 = 12_30772
Original SNP name = U32_8961_658
Most representative HarvEST:Barley Assembly #32 Unigene = 8961
Most representative HarvEST:Barley Assembly #35 Unigene = 4920
HarvEST Unigene 35 Probe Set =
Unigene 35 Rice Locus = LOC_Os07g36940
Description for best rice BLAST hit to Unigene 35 member = eukaryotic translation initiation factor 4G, putative, expressed; E value = 1E-164
Marker name in barley Pilot OPA3 = 3_0772
Marker name in barley OPA2 = 12_30772
Description for best rice BLAST hit to Unigene 35 member = protein eukaryotic translation initiation factor 4G, putative, expressed; E value = 1E-164
BLAST hit in the rice genome = eukaryotic translation initiation factor 4G, putative, expressed