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GrainGenes Locus Report: POPA3_0958

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Locus
POPA3_0958  [ Marker Report ]
Type
SNP
Synonym
Other name12_30958
BOPA2_12_30958
Synonym12_30958
Chromosome
5H
Chromosome Arm
5HL
Map
Barley, 2012 9KSNP 5H169.4
[ Show all 6 ]
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Map Data
Barley, 2012 9KSNP
[ Show all 6 ]
Species
Hordeum vulgare
Probe
HAR35_357
i_12_30958
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 12 ]
Marker name in barley Pilot OPA1 = 3_0958
Marker name in barley OPA1 = 12_30958
Original SNP name = SCRI_bbc08695_01_145
Most representative HarvEST:Barley Assembly #32 Unigene = 8695
Most representative HarvEST:Barley Assembly #35 Unigene = 357
HarvEST Unigene 35 Probe Set =
Unigene 35 Rice Locus = LOC_Os03g64400
Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 1E-157
Marker name in barley Pilot OPA3 = 3_0958
Marker name in barley OPA2 = 12_30958
Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 1E-157
BLAST hit in the rice genome = expressed protein