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GrainGenes Locus Report: POPA3_1007

[Submit comment/correction][What is a locus?] A genetic locus is a specific position on a chromosome where a gene or genetic marker is located.

Locus
POPA3_1007  [ Marker Report ]
Type
SNP
Probe
HAR35_39003
i_12_31007
Synonym
Other name12_31007
BOPA2_12_31007
Synonym12_31007
Chromosome
6H
Chromosome Arm
6HS
Map
Barley, 2012 9KSNP 6H52.8
Hordeum-OPA-2009-6H54.6
Hordeum-OPA123-2008-6H54.6
Hordeum-OPAConsensus-2011-6H58.48
Hordeum-OWB-OPA2008-6H66.332
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0048L06
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 10 ]
Marker name in barley Pilot OPA1 = 3_1007
Marker name in barley OPA1 = 12_31007
Original SNP name = SCRI_olad_168_08
Most representative HarvEST:Barley Assembly #32 Unigene = 30392
Most representative HarvEST:Barley Assembly #35 Unigene = 39003
HarvEST Unigene 35 Probe Set = HK04I23r_at
Unigene 35 Rice Locus =
Description for best rice BLAST hit to Unigene 35 member = ; E value =
Marker name in barley Pilot OPA3 = 3_1007
Marker name in barley OPA2 = 12_31007

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