Query (optional)   in Class  

GrainGenes Locus Report: POPA3_1015

[ Printable Version ]  [ Submit comment/correction ]

Locus
POPA3_1015  [ Marker Report ]
Type
SNP
Synonym
Other name12_31015
BOPA2_12_31015
Synonym12_31015
Chromosome
3H
Chromosome Arm
3HS
Map
Hordeum-OPA-2009-3H50.96
Hordeum-OPA123-2008-3H50.96
Hordeum-OPAConsensus-2011-3H60.58
Hordeum-OWB-OPA2008-3H57.492
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0373O22
Probe
HAR35_18534
i_12_31015
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 3_1015
Marker name in barley OPA1 = 12_31015
Original SNP name = SCRI_olad_202_01
Most representative HarvEST:Barley Assembly #32 Unigene = 7498
Most representative HarvEST:Barley Assembly #35 Unigene = 18534
HarvEST Unigene 35 Probe Set = Contig9555_at
Unigene 35 Rice Locus = LOC_Os01g11570
Marker name in barley Pilot OPA3 = 3_1015
Marker name in barley OPA2 = 12_31015
Description for best rice BLAST hit to Unigene 35 member = protein isoamyl acetate-hydrolyzing esterase, putative, expressed; E value = 1E-113
BLAST hit in the rice genome = isoamyl acetate-hydrolyzing esterase, putative, expressed