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GrainGenes Locus Report: POPA3_1026

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Locus
POPA3_1026  [ Marker Report ]
Type
SNP
Synonym
Other name12_31026
BOPA2_12_31026
Synonym12_31026
cdo1196
Chromosome
4H
Chromosome Arm
4HS
Map
Hordeum-OPA-2009-4H48.5
Hordeum-OPA123-2008-4H48.5
Hordeum-OPAConsensus-2011-4H56.22
Hordeum-OWB-OPA2008-4H52.267
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0656J23
Probe
HAR35_42740
i_12_31026
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 12 ]
Marker name in barley Pilot OPA1 = 3_1026
Marker name in barley OPA1 = 12_31026
Original SNP name = UCI_Adh1_1279
Most representative HarvEST:Barley Assembly #32 Unigene = 33052
Most representative HarvEST:Barley Assembly #35 Unigene = 42740
HarvEST Unigene 35 Probe Set =
Unigene 35 Rice Locus = LOC_Os11g10480
Description for best rice BLAST hit to Unigene 35 member = alcohol dehydrogenase 1, putative, expressed; E value = 3E-40
Marker name in barley Pilot OPA3 = 3_1026
Marker name in barley OPA2 = 12_31026
Description for best rice BLAST hit to Unigene 35 member = protein alcohol dehydrogenase 1, putative, expressed; E value = 3E-40
BLAST hit in the rice genome = alcohol dehydrogenase 1, putative, expressed