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GrainGenes Locus Report: POPA3_1032

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Locus
POPA3_1032  [ Marker Report ]
Type
SNP
Synonym
Synonym12_31032
Chromosome
5H
Chromosome Arm
5HL
Map
Hordeum-OPA-2009-5H60.74
Hordeum-OPA123-2008-5H60.74
Hordeum-OPAConsensus-2011-5H52.86
Hordeum-OWB-OPA2008-5H68.182
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Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Sequence
HVVMRXALLhA0612C17
Probe
HAR35_14203
Reference
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 12 ]
Marker name in barley Pilot OPA1 = 3_1032
Marker name in barley OPA1 = 12_31032
Original SNP name = UCI_Adh3_107
Most representative HarvEST:Barley Assembly #32 Unigene = 32678
Most representative HarvEST:Barley Assembly #35 Unigene = 14203
HarvEST Unigene 35 Probe Set =
Unigene 35 Rice Locus = LOC_Os11g10510
Description for best rice BLAST hit to Unigene 35 member = alcohol dehydrogenase 2, putative, expressed; E value = 3E-43
Marker name in barley Pilot OPA3 = 3_1032
Marker name in barley OPA2 = 12_31032
Description for best rice BLAST hit to Unigene 35 member = protein alcohol dehydrogenase 2, putative, expressed; E value = 3E-43
BLAST hit in the rice genome = alcohol dehydrogenase 2, putative, expressed