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GrainGenes Locus Report: POPA3_1049

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Locus
POPA3_1049  [ Marker Report ]
Type
SNP
Synonym
Synonym12_31049
Chromosome
6H
Chromosome Arm
6HL
Map
Hordeum-OPA-2009-6H97.39
Hordeum-OPA123-2008-6H97.39
Hordeum-OPAConsensus-2011-6H112.39
Hordeum-OWB-OPA2008-6H119.497
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Probe
HAR35_14536
Reference
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 14 ]
Marker name in barley Pilot OPA1 = 3_1049
Marker name in barley OPA1 = 12_31049
Original SNP name = UCI_Dhn7_969
Most representative HarvEST:Barley Assembly #32 Unigene = 1161
Most representative HarvEST:Barley Assembly #35 Unigene = 14536
HarvEST Unigene 35 Probe Set = Contig1709_at; Contig1710_at
Unigene 35 Rice Locus = LOC_Os11g26790
Description for best rice BLAST hit to Unigene 35 member = water stress-inducible protein Rab21, putative, expressed; E value = 8E-55
Marker name in barley Pilot OPA3 = 3_1049
Marker name in barley OPA2 = 12_31049
Original SNP name = U35_2762_1119
HarvEST Unigene 35 Probe Set = Contig1709_at, Contig1710_at
Description for best rice BLAST hit to Unigene 35 member = protein water stress-inducible protein Rab21, putative, expressed; E value = 8E-55
BLAST hit in the rice genome = water stress-inducible protein Rab21, putative, expressed