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GrainGenes Locus Report: POPA3_1062

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Locus
POPA3_1062  [ Marker Report ]
Type
SNP
Synonym
Other name12_31062
BOPA2_12_31062
Synonym12_31062
Chromosome
5H
Chromosome Arm
5HL
Map
Hordeum-OPA-2009-5H59.4
Hordeum-OPA123-2008-5H59.4
Hordeum-OPAConsensus-2011-5H51.51
Hordeum-OWB-OPA2008-5H66.008
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_1118
i_12_31062
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 13 ]
Marker name in barley Pilot OPA1 = 3_1062
Marker name in barley OPA1 = 12_31062
Original SNP name = UCI_Pepc_1116
Most representative HarvEST:Barley Assembly #32 Unigene = 2228
Most representative HarvEST:Barley Assembly #35 Unigene = 1118
HarvEST Unigene 35 Probe Set = Contig3250_at; HW08F07V_s_at
Unigene 35 Rice Locus = LOC_Os09g14670
Description for best rice BLAST hit to Unigene 35 member = phosphoenolpyruvate carboxylase 2, putative, expressed; E value = 0
Marker name in barley Pilot OPA3 = 3_1062
Marker name in barley OPA2 = 12_31062
HarvEST Unigene 35 Probe Set = Contig3250_at, HW08F07V_s_at
Description for best rice BLAST hit to Unigene 35 member = protein phosphoenolpyruvate carboxylase 2, putative, expressed; E value = 0
BLAST hit in the rice genome = phosphoenolpyruvate carboxylase 2, putative, expressed