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GrainGenes Locus Report: POPA3_1094

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Locus
POPA3_1094  [ Marker Report ]
Type
SNP
Synonym
Other name12_31094
BOPA2_12_31094
Synonym12_31094
Chromosome
5H
Chromosome Arm
5HS
Map
Hordeum-OPA-2009-5H18.09
Hordeum-OPA123-2008-5H18.09
Hordeum-OPAConsensus-2011-5H11.45
Hordeum-OWB-OPA2008-5H24.722
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0271N22
Probe
HAR35_14446
i_12_31094
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 13 ]
Marker name in barley Pilot OPA1 = 3_1094
Marker name in barley OPA1 = 12_31094
Original SNP name = U35_14446_578
Most representative HarvEST:Barley Assembly #32 Unigene = 835
Most representative HarvEST:Barley Assembly #35 Unigene = 14446
HarvEST Unigene 35 Probe Set = Contig1289_at; Contig1300_x_at; HT06G21u_s_at
Unigene 35 Rice Locus = LOC_Os06g04510
Description for best rice BLAST hit to Unigene 35 member = enolase 1, putative, expressed; E value = 0.0000002
Marker name in barley Pilot OPA3 = 3_1094
Marker name in barley OPA2 = 12_31094
HarvEST Unigene 35 Probe Set = Contig1289_at, Contig1300_x_at, HT06G21u_s_at
Description for best rice BLAST hit to Unigene 35 member = protein enolase 1, putative, expressed; E value = 0.0000002
BLAST hit in the rice genome = enolase 1, putative, expressed