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GrainGenes Locus Report: POPA3_1120

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Locus
POPA3_1120  [ Marker Report ]
Type
SNP
Synonym
Other name12_31120
BOPA2_12_31120
Synonym12_31120
Chromosome
7H
Chromosome Arm
7HS
Map
Hordeum-OPA-2009-7H74.52
Hordeum-OPA123-2008-7H74.52
Hordeum-OPAConsensus-2011-7H75.52
Hordeum-OWB-OPA2008-7H75.181
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_15626
i_12_31120
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 3_1120
Marker name in barley OPA1 = 12_31120
Original SNP name = U35_15626_1421
Most representative HarvEST:Barley Assembly #32 Unigene = 3663
Most representative HarvEST:Barley Assembly #35 Unigene = 15626
HarvEST Unigene 35 Probe Set = Contig5066_at
Unigene 35 Rice Locus = LOC_Os06g44280
Description for best rice BLAST hit to Unigene 35 member = fibroin heavy chain precursor, putative, expressed; E value = 2E-22
Marker name in barley Pilot OPA3 = 3_1120
Marker name in barley OPA2 = 12_31120
Description for best rice BLAST hit to Unigene 35 member = protein fibroin heavy chain precursor, putative, expressed; E value = 2E-22
BLAST hit in the rice genome = fibroin heavy chain precursor, putative, expressed