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GrainGenes Locus Report: POPA3_1164

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Locus
POPA3_1164  [ Marker Report ]
Type
SNP
Synonym
Other name12_31164
BOPA2_12_31164
Synonym12_31164
Chromosome
4H
Chromosome Arm
4HS
Map
Hordeum-OPA-2009-4H32.45
Hordeum-OPA123-2008-4H32.45
Hordeum-OPAConsensus-2011-4H33.35
Hordeum-OWB-OPA2008-4H36.829
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_17097
i_12_31164
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 13 ]
Marker name in barley Pilot OPA1 = 3_1164
Marker name in barley OPA1 = 12_31164
Original SNP name = U35_17097_2008
Most representative HarvEST:Barley Assembly #32 Unigene = 6197
Most representative HarvEST:Barley Assembly #35 Unigene = 17097
HarvEST Unigene 35 Probe Set = Contig8341_at; HVSMEk0006G12r2_s_at
Unigene 35 Rice Locus = LOC_Os03g50810
Description for best rice BLAST hit to Unigene 35 member = receptor protein kinase TMK1 precursor, putative, expressed; E value = 0
Marker name in barley Pilot OPA3 = 3_1164
Marker name in barley OPA2 = 12_31164
HarvEST Unigene 35 Probe Set = Contig8341_at, HVSMEk0006G12r2_s_at
Description for best rice BLAST hit to Unigene 35 member = protein receptor protein kinase TMK1 precursor, putative, expressed; E value = 0
BLAST hit in the rice genome = receptor protein kinase TMK1 precursor, putative, expressed