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GrainGenes Locus Report: POPA3_1174

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Locus
POPA3_1174  [ Marker Report ]
Type
SNP
Synonym
Other name12_31174
BOPA2_12_31174
Synonym12_31174
Chromosome
6H
Chromosome Arm
6HL
Map
Hordeum-OPA-2009-6H55.94
Hordeum-OPA123-2008-6H55.94
Hordeum-OPAConsensus-2011-6H60.65
Hordeum-OWB-OPA2008-6H68.506
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_17201
i_12_31174
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 13 ]
Marker name in barley Pilot OPA1 = 3_1174
Marker name in barley OPA1 = 12_31174
Original SNP name = U35_17201_1074
Most representative HarvEST:Barley Assembly #32 Unigene = 6045
Most representative HarvEST:Barley Assembly #35 Unigene = 17201
HarvEST Unigene 35 Probe Set = Contig8022_at
Unigene 35 Rice Locus = LOC_Os02g40080
Description for best rice BLAST hit to Unigene 35 member = tic20-like protein, putative, expressed; E value = 1E-109
Marker name in barley Pilot OPA3 = 3_1174
Marker name in barley OPA2 = 12_31174
Original SNP name = SCRI_olad_159
Description for best rice BLAST hit to Unigene 35 member = protein tic20-like protein, putative, expressed; E value = 1E-109
BLAST hit in the rice genome = tic20-like protein, putative, expressed