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GrainGenes Locus Report: POPA3_1241

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Locus
POPA3_1241  [ Marker Report ]
Type
SNP
Synonym
Other name12_31241
BOPA2_12_31241
Synonym12_31241
Chromosome
7H
Chromosome Arm
7HL
Map
Hordeum-OPA-2009-7H140.21
Hordeum-OPA123-2008-7H140.21
Hordeum-OWB-OPA2008-7H160.552
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Map Data
Barley, OPA 2009, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0577M08
Probe
HAR35_18761
i_12_31241
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 3_1241
Marker name in barley OPA1 = 12_31241
Original SNP name = U35_18761_884
Most representative HarvEST:Barley Assembly #32 Unigene = 9134
Most representative HarvEST:Barley Assembly #35 Unigene = 18761
HarvEST Unigene 35 Probe Set = Contig12150_at; Contig12151_at; HS04A09u_s_at
Unigene 35 Rice Locus =
Description for best rice BLAST hit to Unigene 35 member = ; E value =
Marker name in barley Pilot OPA3 = 3_1241
Marker name in barley OPA2 = 12_31241
Original SNP name = U32_6448_2331
HarvEST Unigene 35 Probe Set = Contig12150_at, Contig12151_at, HS04A09u_s_at