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GrainGenes Locus Report: POPA3_1324

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Locus
POPA3_1324  [ Marker Report ]
Type
SNP
Synonym
Other name12_31324
BOPA2_12_31324
Synonym12_31324
Chromosome
4H
Chromosome Arm
4HS
Map
Barley, 2012 9KSNP 4H1.1
Hordeum-OPA-2009-4H0.74
Hordeum-OPA123-2008-4H0.74
Hordeum-OPAConsensus-2011-4H0.75
Hordeum-OWB-OPA2008-4H1.087
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Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_21988
i_12_31324
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 3_1324
Marker name in barley OPA1 = 12_31324
Original SNP name = U35_21988_580
Most representative HarvEST:Barley Assembly #32 Unigene = 14956
Most representative HarvEST:Barley Assembly #35 Unigene = 21988
HarvEST Unigene 35 Probe Set = Contig17296_at
Unigene 35 Rice Locus = LOC_Os09g39740
Description for best rice BLAST hit to Unigene 35 member = amino acid binding protein, putative, expressed; E value = 2E-73
Marker name in barley Pilot OPA3 = 3_1324
Marker name in barley OPA2 = 12_31324
Description for best rice BLAST hit to Unigene 35 member = protein amino acid binding protein, putative, expressed; E value = 2E-73
BLAST hit in the rice genome = amino acid binding protein, putative, expressed