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GrainGenes Locus Report: POPA3_1401

[Submit comment/correction][What is a locus?] A genetic locus is a specific position on a chromosome where a gene or genetic marker is located.

Locus
POPA3_1401  [ Marker Report ]
Type
SNP
Probe
HAR35_3782
Synonym
Synonym12_31401
Chromosome
1H
Chromosome Arm
1HL
Map
Hordeum-OPA-2009-1H63.54
Hordeum-OPA123-2008-1H63.54
Hordeum-OPAConsensus-2011-1H61.39
Hordeum-OWB-OPA2008-1H70.83
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Reference
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 13 ]
Marker name in barley Pilot OPA1 = 3_1401
Marker name in barley OPA1 = 12_31401
Original SNP name = U35_3782_614
Most representative HarvEST:Barley Assembly #32 Unigene = 8101
Most representative HarvEST:Barley Assembly #35 Unigene = 3782
HarvEST Unigene 35 Probe Set = Contig10577_at
Unigene 35 Rice Locus = LOC_Os05g33000
Description for best rice BLAST hit to Unigene 35 member = RING zinc finger protein, putative, expressed; E value = 1E-140
Marker name in barley Pilot OPA3 = 3_1401
Marker name in barley OPA2 = 12_31401
Original SNP name = U35_17286_433
Description for best rice BLAST hit to Unigene 35 member = protein RING zinc finger protein, putative, expressed; E value = 1E-140
BLAST hit in the rice genome = RING zinc finger protein, putative, expressed

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