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GrainGenes Locus Report: POPA3_1443

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Locus
POPA3_1443  [ Marker Report ]
Type
SNP
Synonym
Synonym12_31443
Chromosome
6H
Chromosome Arm
6HL
Map
Hordeum-OPA-2009-6H55.65
Hordeum-OPA123-2008-6H55.65
Hordeum-OPAConsensus-2011-6H59.25
Hordeum-OWB-OPA2008-6H67.419
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Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Sequence
HVVMRXALLhA0807P15
Probe
HAR35_4793
Reference
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 13 ]
Marker name in barley Pilot OPA1 = 3_1443
Marker name in barley OPA1 = 12_31443
Original SNP name = U35_4793_444
Most representative HarvEST:Barley Assembly #32 Unigene = 11219
Most representative HarvEST:Barley Assembly #35 Unigene = 4793
HarvEST Unigene 35 Probe Set = Contig14703_at
Unigene 35 Rice Locus = LOC_Os02g38029
Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 1E-24
Marker name in barley Pilot OPA3 = 3_1443
Marker name in barley OPA2 = 12_31443
Original SNP name = U35_17528_729
Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 1E-24
BLAST hit in the rice genome = expressed protein