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GrainGenes Locus Report: POPA3_1446

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Locus
POPA3_1446  [ Marker Report ]
Type
SNP
Synonym
Other name12_31446
BOPA2_12_31446
Synonym12_31446
Chromosome
2H
Chromosome Arm
2HS
Map
Barley, SFNB QTL 2017 2H0
Hordeum-OPA-2009-2H0
Hordeum-OPA123-2008-2H0
Hordeum-OPAConsensus-2011-2H0.66
Hordeum-OWB-OPA2008-2H1.12
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Barley, SFNB QTL 2017
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0677J01
Probe
HAR35_4853
i_12_31446
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 10 ]
Marker name in barley Pilot OPA1 = 3_1446
Marker name in barley OPA1 = 12_31446
Original SNP name = U35_4853_243
Most representative HarvEST:Barley Assembly #32 Unigene = 10045
Most representative HarvEST:Barley Assembly #35 Unigene = 4853
HarvEST Unigene 35 Probe Set = Contig13877_at
Unigene 35 Rice Locus =
Description for best rice BLAST hit to Unigene 35 member = ; E value =
Marker name in barley Pilot OPA3 = 3_1446
Marker name in barley OPA2 = 12_31446