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GrainGenes Locus Report: POPA3_1452

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Locus
POPA3_1452  [ Marker Report ]
Type
SNP
Synonym
Other name12_31452
BOPA2_12_31452
Synonym12_31452
Chromosome
7H
Chromosome Arm
7HS
Map
Barley, 2012 9KSNP 7H68.4
Hordeum-OPA-2009-7H73.75
Hordeum-OPA123-2008-7H73.75
Hordeum-OPAConsensus-2011-7H69.55
Hordeum-OWB-OPA2008-7H74.094
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Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0698D08
Probe
HAR35_5090
i_12_31452
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 13 ]
Marker name in barley Pilot OPA1 = 3_1452
Marker name in barley OPA1 = 12_31452
Original SNP name = U35_5090_830
Most representative HarvEST:Barley Assembly #32 Unigene = 10524
Most representative HarvEST:Barley Assembly #35 Unigene = 5090
HarvEST Unigene 35 Probe Set = Contig13786_at
Unigene 35 Rice Locus = LOC_Os06g19620
Description for best rice BLAST hit to Unigene 35 member = protein SFT2, putative, expressed; E value = 1E-107
Marker name in barley Pilot OPA3 = 3_1452
Marker name in barley OPA2 = 12_31452
Original SNP name = U32_3530_642
Description for best rice BLAST hit to Unigene 35 member = protein protein SFT2, putative, expressed; E value = 1E-107
BLAST hit in the rice genome = protein SFT2, putative, expressed