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GrainGenes Locus Report: POPA3_1469

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Locus
POPA3_1469  [ Marker Report ]
Type
SNP
Synonym
Synonym12_31469
Chromosome
6H
Chromosome Arm
6HL
Map
Hordeum-OPA-2009-6H126.18
Hordeum-OPA123-2008-6H126.18
Hordeum-OPAConsensus-2011-6H136.66
Hordeum-OWB-OPA2008-6H156.472
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Probe
HAR35_5421
Reference
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 3_1469
Marker name in barley OPA1 = 12_31469
Original SNP name = U35_5421_309
Most representative HarvEST:Barley Assembly #32 Unigene = 9231
Most representative HarvEST:Barley Assembly #35 Unigene = 5421
HarvEST Unigene 35 Probe Set = Contig11781_at; Contig11782_s_at
Unigene 35 Rice Locus = LOC_Os02g57766
Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 6E-26
Marker name in barley Pilot OPA3 = 3_1469
Marker name in barley OPA2 = 12_31469
Original SNP name = U35_6439_860
HarvEST Unigene 35 Probe Set = Contig11781_at, Contig11782_s_at
Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 6E-26
BLAST hit in the rice genome = expressed protein