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GrainGenes Locus Report: POPA3_1520

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Locus
POPA3_1520  [ Marker Report ]
Type
SNP
Synonym
Other name12_31520
BOPA2_12_31520
Synonym12_31520
Chromosome
5H
Chromosome Arm
5HO
Map
Hordeum-OPA-2009-5H51.3
Hordeum-OPA123-2008-5H51.3
Hordeum-OPAConsensus-2011-5H42.41
Hordeum-OWB-OPA2008-5H58.35
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Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0115G14
Probe
HAR35_7709
i_12_31520
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 10 ]
Marker name in barley Pilot OPA1 = 3_1520
Marker name in barley OPA1 = 12_31520
Original SNP name = U35_7709_655
Most representative HarvEST:Barley Assembly #32 Unigene = 12993
Most representative HarvEST:Barley Assembly #35 Unigene = 7709
HarvEST Unigene 35 Probe Set = Contig16514_at
Unigene 35 Rice Locus =
Description for best rice BLAST hit to Unigene 35 member = ; E value =
Marker name in barley Pilot OPA3 = 3_1520
Marker name in barley OPA2 = 12_31520