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GrainGenes Locus Report: POPA3_1533

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Locus
POPA3_1533  [ Marker Report ]
Type
SNP
Synonym
SynonymABG319e
Chromosome
1H
Chromosome Arm
1HS
Map
Barley-Core-2014_1H12.67
Hordeum-OPA-2009-1H10.67
Hordeum-OPA123-2008-1H10.67
Hordeum-OPAConsensus-2011-1H11.35
Hordeum-OWB-OPA2008-1H17.767
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Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Barley, USDA Core, 2014 Consensus
Sequence
HVVMRXALLhA0711N16
Probe
HAR35_904
Reference
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 10 ]
Marker name in barley Pilot OPA1 = 3_1533
Most representative HarvEST:Barley Assembly #32 Unigene = 26
Most representative HarvEST:Barley Assembly #35 Unigene = 904
HarvEST Unigene 35 Probe Set = Contig34_s_at
Unigene 35 Rice Locus = LOC_Os12g36210
Description for best rice BLAST hit to Unigene 35 member = subtilisin-chymotrypsin inhibitor CI-1B, putative, expressed; E value = 5E-24
Marker name in barley Pilot OPA3 = 3_1533
Original SNP name = U35_16668_351
Description for best rice BLAST hit to Unigene 35 member = protein subtilisin-chymotrypsin inhibitor CI-1B, putative, expressed; E value = 5E-24
BLAST hit in the rice genome = subtilisin-chymotrypsin inhibitor CI-1B, putative, expressed