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GrainGenes Map Data Report: Wheat, SynOpDH GBS 2013

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Map Data
Wheat, SynOpDH GBS 2013
Map
SynOpDH-1A
NCBI Sequence Read Archive
SRX212332
Species
Triticum aestivum
Female Parent
Altar84/Ae. squarrosa (219) CIGM86.940
Male Parent
Opata M 85
Type
Genetic
Map Units
cM
Reference
ReferenceSaintenac C et al. (2013) Sequence-Based Mapping of the Polyploid Wheat Genome G3: Genes, Genomes, Genetics 3:1105.
URL
/ggdownload/Wheat_SynOpDH_GBS_2013.zipMap positions (.csv, 3 MB compressed)
/ggdownload/Wheat_SynOpDH_GBS_2013_matrix.zipMapping scores matrix (.csv, 20 MB compressed)
/ggdownload/Wheat_SynOpDH_GBS_2013_markers.zipGBS marker sequences (.csv, 12 MB compressed)
Contact
Akhunov, Eduard
Remarks
SynOpDH integrated genetic map
Doubled-haploid lines (182) from the cross Synthetic x Opata were genotyped by sequencing of complexity-reduced DNA libraries generated with PstI plus MseI, MspI or MluI restriction enzymes, using an Illumina HiSeq2000 instrument.
Markers: 360,000 GBS presence/absence variants, 57,000 GBS SNPs, 2740 gene-derived SNPs from the wheat 9K iSelect array (wsnp), 1350 DArTs (mainly wPt), 100 SSRs (barc, cfd, gwm, wmc) and several STSs (csLV34, cssfr5, Lr21, ncw1, Ppd1, sr2).