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GrainGenes Map Data Report: Barley, AxHs/QTL

Map Data
Barley, AxHs/QTL
Map
Hordeum-Pillen-1H
[ Show all 6 ]
Species
Hordeum vulgare
Parent
Apex (barley)
ISR101-23 (barley)
Type
Genetic
Map Units
cM, Kosambi
Reference
ReferencePillen K et al. (2003) Advanced backcross QTL analysis in barley (Hordeum vulgare L.) Theoretical and Applied Genetics 107:340-352.
Contact
Pillen, Klaus
Remarks
This is the first described advanced-backcross QTL using spring barley as a model, and is the first barley QTL study based exclusively on SSR markers. The mapping population was created from a cross between Hordeum vulgare (Apex) and Hordeum spontaneum (ISR-101-23) followed by 2 cycles of backcrossing with Apex and one cycle of selfing. 136 randomly chosen individuals were used for genotyping and these were subsequently bulk propagated for field testing; BC2F2:5 in 1999, and BC2F2:6 in 2000.
13 quantitative traits were measured in up to 6 environments (3 sites over 2 years), resulting in 86 putative QTLs among 585 marker x trait combinations.
SSR markers polymorphic between the parents but failing to show the ISR101-23 allele in the BC2F2 population are assigned an 'Error 1' to their map position resulting in placement on the map in a column to the right of markers with both alleles found in the BC2F2 population. QTLs are in the right-most column on the interactive maps.
Data Curator
Carollo, Victoria6.03
Trait Study
Above ground biomass, Pillen03
[ Show all 13 ]
QTL
QHea.pil-1H.1
[ Show all 86 ]
Locus
[ Hide all but 1 of 67 ]
Bmac0029
Bmac0113
Bmac0134
Bmac0213
Bmag0013
Bmag0067
Bmag0113
Bmag0120
Bmag0131
Bmag0135
Bmag0211
Bmag0225
Bmag0321
Bmag0337
Bmag0353
Bmag0378
Bmag0385
BMS64
Centromere-1H
Centromere-2H
Centromere-3H
Centromere-4H
Centromere-5H
Centromere-7H
EBmac0415
EBmac0658
EBmac0705
EBmac0755
EBmac0764
EBmac0824
EBmac0871
GMS1
GMS116
GMS21
GMS27
GMS3
GMS46
GMS89
HV02287
Hv13GEIII
HvA22S
HVALAAT
HvB23D
HvB23D4
HVBAMY
HVBKASI
HVCMA
HVCSG
HvES1A
HvITR1
HvLTPPB
HVM20
HVM27
HVM33
HVM4
HVM40
HVM44
HVM54
HVM6
HVM64
HVM67
HVM68
HvPAZXG
HVPRP1B
HvSS1
HvUDPGPP
WMS6