GrainGenes Map Data Report: Oat-2004-P39xP48

Wight CP et al. (2004) Discovery, localization, and sequence characterization of molecular markers for the crown rust resistance genes Pc38, Pc39, and Pc48 in cultivated oat (Avena sativa L.) Molecular Breeding 14:349-361.

Contact

Wight, Charlene

Remarks

Molecular markers for the crown rust resistance genes Pc39 and Pc48 were identified using near-isogenic lines and bulked segregant analysis. Six markers for Pc48, the closest being 6 cM away, were found. Three markers for Pc39 were also found, one of which cosegregated with the gene. A number of markers unlinked to the genes under study also formed linkage groups. Four of these show homology or homoeology to each other and to the Pc39 region in Pendek3948.

Submitted to GrainGenes 06 Nov 2017.

Line numbers: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 60, 61, 62, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 80, 81, 82, 83, 84, 85, 86, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140.

Scoring: 1=Pendek-39, 2=heterozygous, 3=Pendek-48, 4=Pendek-48 or heterozygous, 5=Pendek-39 or heterozygous, 0=missing data

Locus

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aco165rv	211211201211222221321111232222111333221323223221312221132223322222121222232222213312122221122121332233322121114132211112322322122222221
aco190x	005425404311212321112322512231122211112131334322213222211112123123333222122122211331222231222331122213121223221223221212132321321222231
bcd1380x	444414404414441444444441444441444444444114444441444444114144414144444444441444444444444444444411444411144444444144411444414444144441111
bcd1643c	411211201211222221321111234422111333221323223421312221134423322222121222232222213312122221122121332233322121113132211112322322122222221
cdo1090d	121321102332312232233222212331221322233333212223222112122322233213142321211223122332122423322223312122222222324311122222222211321313134
cdo1471	211211201211222221321111232222111333221323223221312221132223322222121222432222213012122221122121332233322121113132311112322322122222221
cdo1523x	222112202323221232533352555351335555352113323221312223113123212122223322221323332225323322223211233325523222222125213223212232123521111
cdo212x	121321102332312233233222212231221322133333212223222112122322233213121321211224122332122223322223312122222222322311122222222211321313132
cdo337x	211211201211222221321111232222111333221323223221312221132223322222121222232222213312122222122121332233322121112132311112322322122222221
cdo358x	441441104411444441114414414441144411144041444444414444111114144144444444144144444441444141444441114414141444441444441414144441441444441
cdo666x	005555503555533550353555555553553355555555555535555553353055555535555555555553355555555555555050505535555553555553553535533555555555353
cdo666y	141321102332312234244055414331241344133343212224222112122422433013125301211223122332122220022223312122222222322311122222244211421314132
isu1961crv	211511201211222221321111232222111332221323223221312221132223322322121222232222213312122221122121332233322121112132211112322323122222221
isu2287x	535555503555533553353555555553553355555555555535555553353555555535555555555553355555555555555555555535555553555553555535533555555555353
Pc39	232212223112233223313222211223223322211222121232112223323222221232222112112223312212112122122222222232222123222223122232133222122222313
Pc48	111211212211222221321112222222111333221323223221312221122222322222121222233222113312122222122131322233322121222132321112332322222122221
umn401	211211201211222221321111232222111333221323223221312221132223322222121222232222213312122221122121332233322121112132211112322322123222221
umn41	223112202323221132233322222321332121211113323221312233113123212222223322221323332222323322223111233312123222212122212223222232123221121
umn5032_1c	232212203112233223313221211213223322211222121232112223323222221132225112122223312212112122122222242232222123222223122232133222122222313


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