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GrainGenes Map Data Report: Oat-2018-Consensus

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Map Data
Oat-2018-Consensus
Map
Oat-2018-Consensus_Mrg01
[ Show all 21 ]
Species
Avena sativa
Parent
Oat Diversity Panel
Type
genetic
Reference
ReferenceBekele WA et al. (2018) Haplotype based genotyping-by-sequencing in oat genome research Plant Biotechnology Journal.
Contact
Wight, Charlene
Remarks
This map represents the consensus map from Chaffin et al 2016 with all placed markers. Note: A total of 19074 legacy GBS loci can be recognized by the 'avgbs' prefix followed by a number with no decimals. The new Haplotag loci have either a single decimal (for TL-haplotype loci) or two decimals (for SNP loci, where the second decimal identifies the SNP position). Marker scores can be found in the Supplementary Material accompanying the paper.
Population names: BT DE GH HZ KO OT PG PO SH VL
Locus
[ Hide all but 1 of 99846 ]
11017
11AB4_3RI
5435
6183
9406
A02.1000
A02.1100
A03.300
A03.400
A03.875
A04.360
A04.700
A04.850
A08.1350
A10.625
A12.1050
A12.1075
A12.375
A17.350
aa12.1050
aa12.1075
aa12.550
AB02.275
AB02.410
AB09.510
AB_AM-190
AB_AM_04
AB_AM_09
AB_AM_123-200
AB_AM_123-220
AB_AM_130-280
AB_AM_183-265
AB_AM_219-295
AB_AM_68-250
AB_AM_869-337
AB_AM_87_200
AB_AM_894-208
AB_AM_912-210
AB_AM_914-250
AB_AM_914-280
AB_SC_02
AB_SC_03
AB_SC_04
AB_SC_05
AB_SC_07
AB_SC_08
AB_SC_09
AB_SC_10
AB_SC_11
AB_SC_12
AB_SC_14
AB_SC_16a
AB_SC_16b
AB_SC_17
AB_SC_18
AB_SC_20
AB_SC_21
AB_SSR_1
AB_SSR_10
AB_SSR_2
AB_SSR_3
AB_SSR_4
AB_SSR_5
AB_SSR_6
AB_SSR_7
AB_SSR_8
AC03.480
AC06.480
Accase1
ACO117DI
ACO118A
ACO118B
ACO123
ACO124
ACO127RI
ACO128RI
ACO134ARI
ACO134BRI
ACO135RV
ACO136ARI
ACO136BRI
ACO136CRI
ACO137DI
ACO138RI
ACO139RV
ACO142A
ACO142B
ACO145RV
ACO146
ACO164
ACO165RV
ACO168A
ACO168B
ACO176
ACO181
ACO182A
ACO182B
ACO182D
ACO183ARV
ACO183BRV
ACO190RV
ACO192ADI
ACO192CDI
ACO193ARV
ACO193BRV
ACO193CRV
ACO193ERV
ACO220DI
ACO221A
ACO221B
ACO226A
ACO226B
ACO227
ACO237DI
ACO238RI
ACO245A
ACO245B
ACOR209A
ACOR209B
ACOR221
ACOR242
ACOR254A
ACOR254B
ACOR372
Acp1
Acp2
AD04.810
Adh2A
Adh2B
Adh2C
AF237553-1
AF237553-2
ALrk1A1_B
ALrk1A1_C
ALrk1A1_D
ALrk1A1_E
AM-112
AM1
AM102
AM112
AM22-1
AM22-2
AM3
AM42
AM83
AM83-1
AM87
AME003
AME007
AME010
AME012
AME013
AME016
AME018
AME019b
AME023a
AME023b
AME023c
AME038
AME045
AME048
AME053
AME055
AME062
AME065
AME066
AME067-2
AME076
AME077
AME086
AME088
AME102
AME105
AME106
AME107
AME112
AME117
AME131
AME137
AME138
AME141
AME152
AME154
AME162
AME168
AME177
AME178
AME184
AME186
AME192
AME196
AME205
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avgbs2_100031.1
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avgbs2_100031.1.51
avgbs2_100081.1
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avgbs2_100092.1
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avgbs2_100172.1.44
avgbs2_100178.1
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avgbs2_101456.1
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avgbs2_101473.1
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avgbs2_101499.1
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