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GrainGenes Map Data Report: Wheat, Physical, EST

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Map Data
Wheat, Physical, EST
Map
Chinese_Spring_Deletion_1A  [ GBrowser ]
[ Show all 21 ]
Species
Triticum aestivum
Parent
Chinese Spring
Type
Cytogenetic
Physical
Map Units
Fraction length
URL
http://wheat.pw.usda.gov/NSFProject description and methods
http://wheat.pw.usda.gov/cgi-bin/westsql/map_locus.cgiDetailed mapping data
Contact
Anderson, James A.
[ Show all 14 ]
Remarks
Mapping was performed on a set of 101 aneuploid lines derived from Chinese Spring, each line carrying a terminal deletion of one chromosome arm. The breakpoints of these deletion lines define a set of breakpoint intervals (bins), to which the probes were mapped by differences in Southern hybridization to genomic DNA from each line.
Probes were 6,963 cDNA clones, each representing a different EST unigene. Data of 14 July 2003.
Bins with names ending in '*' are merged intervals due to missing data.
Breakpoint Interval
[ Hide all but 1 of 303 ]
1AS3-0.86-1.00
C-1AS1-0.47
1AL3-0.61-1.00
1AS1-0.47-0.86
C-1AL1-0.17
1AL1-0.17-0.61
1AL1-0.17-1.00*
1AS1-0.17-0.47*
1AS1-0.47-1.00*
C1A
1BS.sat-0.31
C-1BS10-0.50
1BL1-0.47-0.69
1BL2-0.69-0.85
1BL3-0.85-1.00
1BS.sat18-0.50-1.00
1BS.sat19-0.31-0.50
1BS9-0.84-1.06
1BS10-0.50-0.84
C-1BL6-0.32
1BL6-0.32-0.47
1BL1-0.47-0.85*
1BL1-0.47-1.00*
1BL2-0.69-1.00*
1BL6-0.32-0.69*
1BS.sat19-0.31-1.00*
C-1BL1-0.47*
C1B
1DS5-0.70-1.00
1DS1-0.59-0.70
1DS3-0.48-0.59
C-1DS3-0.48
C-1DL4-0.18
1DL4-0.18-0.41
1DL2-0.41-1.00
1DL2-0.18-1.00*
1DL4-0.18-1.00*
1DS3-0.48-0.70*
C-1DL2-0.41*
C-1DS1-0.59*
C1D
C-2AS5-0.78
C-2AL1-0.85
2AL1-0.85-1.00
2AS5-0.78-1.00
C2A
2BS3-0.84-1.00
C-2BS1-0.53
2BL6-0.89-1.00
2BS4-0.75-0.84
2BS1-0.53-0.75
C-2BL2-0.36
2BL2-0.36-0.50
2BL4-0.50-0.89
2BL2-0.36-0.89*
2BL4-0.50-1.00*
2BS1-0.53-0.84*
2BS1-0.53-1.00*
2BS4-0.75-1.00*
2BS4-0.84-1.00*
C-2BL6-0.89*
C-2BS1-0.84*
C-2BS4-0.75*
C-2BS4-0.84*
C2B
2DS5-0.47-1.00
2DS1-0.33-0.47
C-2DS1-0.33
C-2DL3-0.49
2DL3-0.49-0.76
2DL9-0.76-1.00
2DL3-0.49-1.00*
2DS1-0.33-1.00*
C-2DL9-0.76*
C-2DS1-0.47*
C-2DS5-0.47*
C2D
3AS4-0.45-1.00
C-3AL3-0.42
3AL5-0.78-1.00
3AS2-0.23-0.45
C-3AS2-0.23
3AL3-0.42-0.78
3AL3-0.42-1.00*
C-3AL5-0.78*
C-3AS4-0.45*
C3A
C-3BL10-0.50*
C-3BL2-0.22
3BL10-0.50-0.63
3BL7-0.63-1.00
3BS9-0.57-0.78
3BS8-0.78-1.00
3BS1-0.33-0.57
C-3BS1-0.33
3BL2-0.22-0.50
3BL10-0.50-1.00*
3BS1-0.33-0.78*
3BS1-0.33-1.00*
3BS9-0.57-1.00*
C-3BL7-0.63*
C-3BS9-0.57*
C3B
3DS6-0.55-1.00
3DS3-0.24-0.55
C-3DS3-0.24
C-3DL2-0.27
3DL2-0.27-0.81
3DL3-0.81-1.00
3DL2-0.27-1.00*
3DL3-0.27-1.00*
3DS3-0.24-1.00*
C-3DL3-0.81*
C-3DS6-0.55*
C3D
4AL13-0.59-0.66
4AL4-0.80-1.00
4AS3-0.76-1.00
4AS4-0.63-0.76
4AS1-0.20-0.63
C-4AS1-0.20
C-4AL12-0.43
4AL12-0.43-0.59
4AL5-0.66-0.80
4AL11-0.66-0.80*
4AL12-0.43-0.66*
4AL12-0.43-1.00*
4AL13-0.59-1.00*
4AL5-0.66-1.00*
4AS1-0.20-1.00*
4AS4-0.63-1.00*
C-4AL13-0.59*
C4A
4BS4-0.37-0.57
C-4BS4-0.37
4BL5-0.86-1.00
4BS1-0.81-1.00
4BS8-0.57-0.81
C-4BL1-0.71
4BL1-0.71-0.86
4BL1-0.71-1.00*
4BL1-0.86-1.00*
4BL5-0.71-0.86
4BS4-0.37-1.00*
C4B
4DS2-0.82-1.00
4DS3-0.67-0.82
4DS1-0.53-0.67
C-4DS1-0.53
C-4DL9-0.31
4DL9-0.31-0.56
4DL13-0.56-0.71
4DL12-0.71-1.00
4DL13-0.56-1.00*
4DL9-0.31-0.71*
4DL9-0.31-1.00*
4DL9-0.56-0.71*
4DS3-0.67-1.00*
C-4DL13-0.56*
C4D
5AS3-0.75-0.98
5AL23-0.87-1.00
5AS1-0.40-0.75
C-5AS1-0.40
5AS7/10-0.98-1.00
C-5AL12-0.35
5AL12-0.35-0.57
5AL10-0.57-0.78
5AL17-0.78-0.87
5AL10-0.57-0.87*
5AL10-0.57-1.00*
5AL12-0.35-0.78*
5AL12-0.35-0.87*
5AL12-0.35-1.00*
5AL17-0.78-1.00*
5AS1-0.40-0.98*
5AS1-0.40-1.00*
5AS3-0.75-1.00*
C-5AL10-0.57*
C-5AL12-0.57*
C-5AL17-0.78*
C-5AS1-0.75*
C-5AS3-0.75*
C5A
5BS6-0.81-1.00
5BS5-0.71-0.81
5BS8-0.56-0.71
C-5BL6-0.29
5BL14-0.75-0.76
5BL9-0.76-0.79
5BL1-0.55-0.75
5BL16-0.79-1.00
5BS4-0.43-0.56
C-5BS4-0.43
5BL6-0.29-0.55
5BL14-0.75-0.79*
5BL6-0.29-0.75*
5BL9-0.76-1.00*
5BL9/14-0.75-0.79*
5BS4-0.43-0.81*
5BS5-0.71-1.00*
5BS8-0.56-1.00*
C-5BL14-0.75*
C-5BL9-0.76*
C-5BS8-0.56*
C5B
5DS2-0.78-1.00
C-5DL1-0.60
5DL1-0.60-0.74
5DL9-0.74-0.76
5DL5-0.76-1.00
5DS5-0.67-0.78
5DS1-0.63-0.67
C-5DS1-0.63
5DL1-0.60-0.76*
5DL9-0.74-1.00*
5DS5-0.67-1.00*
C-5DL9-0.74*
C-5DS5-0.67*
C5D
C-6AL4-0.55
6AS5-0.65-1.00
6AS1-0.35-0.65
C-6AS1-0.35
6AL4-0.55-0.90
6AL8-0.90-1.00
6AL4-0.55-1.00*
6AS1-0.35-1.00*
C-6AL4-0.90*
C-6AL8-0.90*
C-6AS5-0.65*
C6A
6BS-Sat
6BS5-0.76-1.05
C-6BL3-0.36
C-6BS5-0.76
6BL3-0.36-0.40
6BL5-0.40-1.00
C-6BL5-0.40*
C6B
6DS6-0.99-1.00
6DS4-0.79-0.99
6DS2-0.45-0.79
C-6DS2-0.45
C-6DL6-0.29
6DL6-0.29-0.47
6DL1-0.47-0.68
6DL12-0.68-0.74
6DL11-0.74-0.80
6DL10-0.80-1.00
6DL1-0.47-0.74*
6DL1-0.47-1.00*
6DL11-0.74-1.00*
6DL12-0.68-0.80*
6DL12-0.68-1.00*
6DL6-0.29-0.68*
6DL6-0.29-0.80*
6DL6-0.29-1.00*
6DS4-0.79-1.00*
C-6DS4-0.79*
C6D
7AS1-0.89-1.00
7AS5-0.59-0.89
7AL21-0.74-0.86
7AL18-0.90-1.00
7AS8-0.45-0.59
C-7AS8-0.45
C-7AL1-0.39
7AL1-0.39-0.71
7AL17-0.71-0.74
7AL16-0.86-0.90
7AL1-0.39-1.00*
7AL16-0.86-1.00*
7AL17-0.71-1.00*
7AL21-0.74-0.90*
7AS5-0.59-1.00*
7AS8-0.45-0.89*
7AS8-0.45-1.00*
C-7AS5-0.59*
C7A
7BS1-0.27-1.00
C-7BS1-0.27
7BL10-0.78-1.00
C-7BL2-0.33
7BL2-0.33-0.63
7BL2-0.33-0.78*
7BL7-0.63-0.78
7BL7-0.63-1.00*
C-7BL7-0.63*
C7B
7DS4-0.61-1.00
7DS5-0.36-0.61
C-7DS5-0.36
C-7DL5-0.30
7DL5-0.30-0.61
7DL2-0.61-0.82
7DL3-0.82-1.00
7DL2-0.61-1.00*
7DL5-0.30-0.82*
7DS5-0.36-1.00*
7DS5-0.70-1.00*
C-7DS4-0.61*
C7D