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GrainGenes Map Data Report: Oat, MxN, genetic 2005

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Map Data
Oat, MxN, genetic 2005
Map
Oat-MxN_2005-1
[ Show all 31 ]
Species
Avena sativa
Female Parent
MN841801-1
Male Parent
Noble-2
Type
Genetic
Map Units
cM (Haldane)
Reference
ReferencePortyanko VA et al. (2005) Quantitative trait loci for partial resistance to crown rust, Puccinia coronata, in cultivated oat, Avena sativa L. Theoretical and Applied Genetics 111:313-324.
Contact
Rines, Howard W.
Portyanko, Vladimir A.
Remarks
An oat genetic map generated using a population of 158 F6-derived oat recombinant inbred lines (RILs) from a cross of a partial resistance line MN841801-1 by a susceptible cultivar selection Noble-2. Constructed using Mapmaker version 3.0. LOD threshold of 3.0 was required for linkage mapping (Haldane mapping function). Each AFLP marker name included a Keygene code (http://wheat.pw.usda.gov/ggpages/keygeneAFLPs.html) for the PstI/MseI primer combination followed by a letter referencing the parental source of the fragment (m refers to MN841801-1, and n refers to Noble-2) and the number of a polymorphic band determined for each primer combination starting from the top of the gel. The RFLP loci were designated following Wight et al. (2003, 2004). Multiple polymorphic loci detected by an RFLP probe in MN841801-1 Noble-2 were differentiated by addition of an x, y, and z, based on fragment size, with x representing the largest polymorphic fragment in either parent.
Submitted to GrainGenes 6 June, 2005.
Mapping scores: MN841801 = 0; Noble = 1; missing data = 3
Locus
[ Hide all but 1 of 230 ]
aco11800001310110011110010000111110100000111101101133000 00313103031010010100001101011110130131000100111000 00010030300131311110131100111033113101031031310030 00000001
aco19010001111311110101000011111001100001010011111000131 01300000111001110100011011011110011001101010011101 10111011101100001000110111110111111100111130001001 11101001
aco193x03330111011100101101110101033100011101000331003331 10103000111111100010100000000010011131010000010010 00100011001101101003333311030333333333011030101001 01113010
aco193y11110111000000101110111100010001110110011100011330 11101001000010011010000100001100101110111110100111 01110111100000000111110101100110111101000111001101 00001010
AM311100001010101100100103110013111101101101000111110 00310011111111110111010131001010110110100000003110 01310011110133110111110011001130101101010000110000 01111101
b210011301111110010000111000000010000000001011030100 10111001011010111011100011011100101111100111001101 00000100101010110101011110101033011111100030011030 01110101
b400111111011100101000110101311100011101000111101011 10301000130111100010100001010011011110010100030013 30100031001101001001111111011111111011010010101001 01111110
b510111001111110010000111000000010100000001010010111 10011001011010111001000011011100101101100011001101 11000100101013101101011110100011010011100110011010 01111101
b6x01111011101111011111111001010011100101100111101010 10311111100111010101100110111000100001010110100001 11101131010100000011100111111111010001011130010110 00001110
b6y00110000010010011000001000001100010010000101000000 10101011100100101110010011111101111030011010010001 01000001010000101110010001010010000001000111100100 11000000
b6z10001010031101000111000111013311000101110010011000 00300000000001010001101100000000000001000101101110 00001111001001000001101110101001011000101030010000 00100000
bcd11010101311001311010000111010011000303100100011001100 11311110100000111010110011101101130131001000011000 10010030001110111011110100101101110111111130010010 11001100
bcd112700000110000111010110010100011011101100010000030110 00010110111000000110011101111001010113001111100100 00010010100011101000100100010033311100011000101111 01110011
bcd1192x00300310131110010010310301100111311101011000101030 00000011000100000100000000111010111103001000000100 11111131100000311101111001101133113100010131310030 11101101
bcd1192y00300300111001000001101300001000311110010111101031 11111000110011001000111110111001010013100111101100 00010011111001300010000111000033113110001130301130 11101001
bcd123010011111011110101001011111001100001010111010010101 01303003130001110010010011011000000031101000011100 00111011101110301000110111110110111110110030301131 01101000
bcd126100100110011011001101100111111011100011101000130310 11001101000000001000010010011100100103110111111111 11010300000000101011031001011100101010111330311100 01111000
bcd127011011100101110000103010000100301111331000101100111 10011111000110100100111301011111100100011001031101 01100110100110003110101110110011011001301031001000 00013000
bcd141410011311111100101001011111001100001110011010030101 01110001110001011000010010011100010011000010011101 10011011101130001100100111110111111110011000101100 01101000
bcd172911011300101110000101010000300301311101300101130111 10011111001110100110111101011111110110011301011101 01100113103130001110101110110011013001101011011030 00010000
bcd173511011001011110011111010110100111101101111010001010 10301110131111013111030100000131131030101001000111 10011333300033310110010010010100100130033333301103 30101010
bcd184211011100131110000103010000000101131101000101100111 10011111000110100100111001011111330130011001011101 01100110103110301110101100110011011001301031311010 00011000
bcd187611011130001011001100030000100011001111101000010101 10101000001110100110111000110000000001011011001001 01101111101001010011011101011111111010011111001100 00101100
bcd38500000010100110010010110101100110110001111010101110 00000011000100000110000000110010110103001000000100 11111033333333011101131101101100111100010030310000 01101101
cdo109003000010100110010010110101300110110301101000101000 00000011100100000110000000111013111130001000001101 11111031000010011101131001101133011130010101113000 11003101
cdo113s03131131033300101001133101103333011101003113033311 00001000111110100000100001000000031110030000033010 30100011001001101001111011010111111011010010101001 31111010
CDO117400000110010111110110010100011011101101101101003330 10311110111010003113011100111011011110100110100100 00133100301011101001100100011001011110113030001101 01111010
cdo1196y00010300031000101100010100101311000101301003133310 00311000130000001130100101011011130130111011010011 01101111111100311000011111010011000001100131111011 11010011
cdo1196z01101310001110110111001110101000010111001010131101 10300013131011100110010010001010000131011101101101 01101111110011001000111101000110101011100130001100 11101011
cdo131311111001000011001011111000010111000301101000113303 33310100001001000111010110100010010000100111100111 11001011011100000011110100000011001000011030010101 11001010
cdo134001001111111000011110011110111101010111001010101010 00001000011001000011011011100000011101111001011101 10101110303103000300031303333001001001111131100111 11000100
cdo140210011011111111010000131001001110000300001113130110 00311001011010110011000010011100101101100013001101 00000130101030100101131010101000003133130111013010 01003111
cdo141910033133333331000103333310333311010310110103031300 30300301011101013000030110031101011101111100101100 11010031013033333333333301033311003133331330113111 01003000
cdo143011011100101100000100010000000301111101000301100111 10011111003110100100111001011111100100011001013101 01100110303313001310131303133031013001301031001010 00013000
cdo143301300100110010010000100300101100301010011111101010 00011010100110100000111000101100111003100001010001 10010110101110301010001010100033101111110131101131 10010000
cdo143511000100010100101111000110111111100011000100111130 11301011110000103001000000001031031131000111101011 10111131310033311111110001110131000110130131100111 11000110
cdo146411000010100001010011111101010000101100100111003311 01313011031100001110111011110010010011001011010110 00000111101010300000111010000011101010000010101011 01000001
cdo146610100001110010010011111113333110000101101101103031 30333001131010011110101000100110011130000001000111 01101131101101300001100001100111003000030130300130 11000000
cdo146700111111011100101001110101011100011101000111003333 33301000111111100000100000000010031130010000000010 00100011001101301001111111010111111011010030100001 01110010
cdo1502x00110111111000011001011110301101100301011000001110 00011000110000001011110110111001100011000111100001 01101111110100111000031101110011110130000110011110 11111101
cdo1502y11011100101110000101011010300101111301000101100111 10011111011110100110110101011111100100011001011101 01100110111100001110101110110011013001311011001110 00011001
cdo1502z00110111101000011001011110301101000301011000011110 00011000111000000101111110111001100011000111100001 01101111110000111000001101111011111100300110010110 11110101
cdo150801000000100110011111111101100110111001001111130300 00310011000100003110000000111011110000001000000100 11101011100110011101131001101100111000011330010100 00100101
cdo150911311100001110000101010003000101111101000101101131 10311110031110100110111101011111130130011001011101 01100110111110331110101110110011011031101031011010 00011000
cdo2001000100110010011100001000101101101001111111110131 10311110130100103100100011101110111101100001011011 10010133331110101010001011010110100111013131001111 10011100
cdo20311110301110010001101101300100101301000111001110131 10111111000100011100111010110010000113100111110100 00000000011011000110030110001000103033030111103111 11003000
cdo22001000131101010111000131000100000101300101101130111 00311311110100100100110010101110111100101001000001 11110031110100011110030001001110103131030101103110 11013110
cdo309x01101011110111010100111101010011110101000111101010 10111110010110010010111110010101111011010000000000 11101001010110000011110010101100033333333331010001 10101100
cdo309y01110101011010111000101000101100101000101111103301 01010111110100101100010011101110113100111010010001 11110001110110011111010001010110133333333331101110 11011111
cdo309z11111000010001001000101000010000000111001100113330 01113000000001011001010110010000000010000111100000 01001011000130100011010100010001033333333330010101 11010000
CDO39300100110011011001101100111111011101311101000110111 13110010111111110101101100100011011000010000000000 00101001100110101010131001013001101010111010013100 00111000
cdo39501110010100111001011000111011010100101100111100110 01300010011001010001101001011000111310111001011011 11110101101101311001001101110111001100111011000111 01000000
cdo41411011301010011001000101100310111000010001001133010 11313103031000001101011110100010030030101111100110 01001010311130300011131101000033003000030030300131 11001010
cdo45610101001011110110101100011001101010110011010133301 01311001101111013000001110100101000000011001000111 11100100110001113101130100111300100000101031311010 01111010
cdo46000000000010011011110010000110011100101001010003330 11311111011000003113011000110100011100111110100110 11133310101011010101100110010001011011113030301101 00110010
cdo48201100111111101001010110100001010010110100000100110 11301101110001101010110101100101111030111110111110 01001001010001101001101011001110011100000011010011 10000011
cdo51710101301011111010000111010010000300101100111030001 10011110000001111010110011101100110111001000001000 10011030001133010001110100100101111111111110000011 11101000
cdo54910101001011011010000111010010000100101100111000001 10311113000001111010110010101100130111001000001000 10010000001110310001110100100101110111111130000001 11100000
CDO5700101010001111100010110111011110011111000110100030 00333000131011100011000100001111131030011001001001 11111311101100311001001101111133010100011030310030 00101100
CDO57201100101100010111011111100001300111300001000100001 01111010001101101101010111011110010000110010100010 11110000110111111010111101010111100111010111101111 11111011
cdo608x00111111011100101001110101111100011101000111101011 10301003111111103110100001000011031100010100010010 10100011001001311331111111011111111011010030101001 01111110
cdo608y00010100000111111100010101101000000101100000001010 00311003310101001030001101010001131101110110100130 10111111111100311010011011000011000101100131131031 11000011
cdo608z10033333333330001031011111001100001010131010000111 01313110130001101130011011011110031031101010011100 10111001101100001000110111110113111100111130001001 11103000
CDO6301000001100010000001101000101100101303011111130111 10011010100110100100100011101110111100100001011001 10010101101010111010011111010010101111110111101110 10011100
cdo63811001100011100101111001111111111100011110000111100 11100010111000101001000010001001011111000111101101 11111100111010010011110011010110033333333331110101 11101110
CDO66511010100101110000101010000110001111101100101100111 10111111000110100110111101011110110100011001000101 01100110300313111310101000033131113001301031001010 00000000
cdo71801011011113301001100111111110000010311001001111010 03011000030100010010011110000001000001000010100000 11101031010110100011030100011133000030313100010001 10003000
CDO78001111110100010010001010111011110000100100101003330 11103000001001111110111001110111101011011111111110 01100010111001000001001110011010111011100111110011 01000001
CDO79500111100000110111100011101001010100101001001101010 00011000110101001010001100011001100113111011010010 01011011111100311000011110000033003101100131311031 11000011
cdo8211011301000011001000101010010110000001001000133000 11303103031001001101110110100010030000100111100111 01001011310130300011130101000033003000031030310131 11001010
cdo94211011100101110000101010000100101111101300101100311 10011111031110100100111101031111113130011000011101 01100110101110011110131130110011011100001011011010 33011000
isu125400111011011111111001110001011100111301001111003313 33311010130110001000100001100000031130010101110111 10100100001000311011111010010110111011010030000001 11110010
isu196101000000011010101110101001100101100301101111003333 33301111001110110001100010000000001101011011001101 00111100100110110101010010010101000110001030001001 10101100
isu2000x00101100010000000100100111101111110011000000110110 10011010111111110101001100100111011000010000013000 00111101300303101110111103331130103130311130011101 11113000
isu2000y00100110011011001101100111101111100011100000110110 10011010111111110111001100101011011010010000033000 00111001300313101310131303333000103100011030011101 01110000
isu212400111110010011111010010103333110111100100000011101 00110111111000111110110001110011010010100110010001 01000000001010010011000010011011103333333330100111 11110110
isu218211000010311001010011111110011100110100010101103010 10111011110000011010001001001100111000000011011100 11101010101111101000110110100033101010130030300111 11011000
isu228701311300101130001101310310100311111101030101100011 10011111010110100100110000011111100113011001011301 01100133333333333333333333333333333333333333333333 33333333
isu707x03111111011100101003110101011300011001000111031311 10301000111111133030100000000013011110010000000010 30100011001000101001131111010111111011010030301001 01111110
isu707y10011110001110001000101110101013010100010000130310 10310010100011013010001001101003011011031100100100 00100100000130110100130100010111011010110330330013 00110010
isu707z10011110001110031030100110133011010030110000133310 10310010101011013001100110100113011011330100101101 10100000100130111100130110110101001100110330300010 01111000
isu91601110301110010111000101000101100101000001101133131 01333111110100101100110011111110111130111000010001 10000033310110111110030001010133103011000131101110 11010110
og4111100110100110010011000010010110101001110010100111 11111110000111100001111101100100001100010001010011 01001101101111100010101001000010000001100001001010 01111011
og4900001010000111010111000100011011101100110101000100 00310110131010000110010100111031133130001110100100 10010010000033301001100100010031011100131030301111 01111011
p35m68m400301100110010111000101000103301103001001113113111 10011011130101101110110011101110131300131000000300 11110001110110113111013001010110100111013101101110 11010110
p35m68m633333303011100130301110101111000013101000113003031 00001001111110100110100001000011031300030000000310 00300011001101103001111111010111111011313010101001 01113010
p35m68n100110100110010111000101000111000103000333313113111 10011011130101100110110011101110131300131000000301 11110101110111113111010001000110100111003000101110 11111111
p35m68n211100113101110030010001010110110103101110013103101 01111113030001110001011111010010131310030001010311 01001001101101103330103300000010100001003001011010 03111011
p35m68n311000100010100101111000110111111113111100003113100 11100010131000101001000001001001031311030111101301 10111111111010013011110111110111001111333101100101 11000110
p35m68n733333331011110101300011111001030003333111113103131 11110031131001111100111011011110033301131010011301 10111011101100003000110311110311111100003100001001 11101001
p38m35m413011010001100001000101110100010013100010003113100 00010000130001011113110101010030031301031100000100 00100000000100113000000101000000001000113000100010 01100011
p38m35m503101111010011111010010100110110113100000003013001 10010110031001101113110001011030030301030110100010 10000010010000103010000100010101000011113100000111 11111010
p38m35m713000011000031010011111101010000103101100113003110 01101010031100001101100011111030031301031010000100 00000001001010003000111010010000101010003010100001 01000001
p38m35n133100113011000110010000010001001103110001103103000 11010011030000111113001101101131131311131033333333 33333333333333333333333333333333333333333333333333 33333333
p38m35n203111111001100101001111101011000013101300113103011 00001000131110100103100001300031031310030133333333 33333333333333333333333333333333333333333333333333 33333333
p38m35n2a13101003001001010000101010011000103103100113003011 10011110000000110013100001300130130311031033333333 33333333333333333333333333333333333333333333333333 33333333
p38m35n313101010000011010001010111111000003100100103003110 01100100031100000103111001110130031300030133333333 33333333333333333333333333333333333333333333333333 33333333
p38m35n633333330131111010100111001333111113101100113113010 10011110130111010003111100310131130301030010100000 11101011010110003011100110101100010010013101010001 10101100
p40m50m103111111010011111010010100110110111100010003003000 00010110011001101110010001111010010001031333333333 33333333333333333333333333333333333333333333333333 33333333
p40m50m1300000001000011010110010100013111101100010303003130 00010110111001000110010101111001010000031110100300 10010010100011100003100100010001011100113000101111 01113011
p40m50m1611100011000011111100101100010001003301011100301300 00110010100001001001000010010010010110113111010031 30111111110000001311111010110011011110100300000130 100000010
p40m50m430100001100011010110010100010111103100010003003100 00010110111001000110010111111001030300031110100303 10010010100011100000100100010001011100113000101111 01111011
p40m50m530010001110111010110111001010111113101100013103000 10011110110111010001111010110101130311030110100310 11101001010100003011100010101100010000013101010001 10101110
p40m50n1133333330110110010011110101100110113101001003103130 00010011000101000100000010110011110010031000000300 11101011100110110101111001101100111000013001110000 01101101
p40m50n200011111000110103101100011011111033000111113003011 01100000111000111001001100111000131310131033333333 33333333333333333333333333333333333333333333333333 33333333
p40m50n600110011001000100101100001001111133111100013003000 11101011100110101111110000000110131300130101131301 00000100010011001101110110011110010011003101100001 10100101
p40m51m1003100010100110010010110101100110110301001003103000 10000011000100000100000000110010110110031000300100 11111011100100013301111001111100111300010103113333 33333333
p40m51m1203000003010011011110010300110111100101001013003100 00011111011001001111011001110100011100131110300110 11100010101011113301100110000001011011110000103333 33333333
p40m51m1333333333333333333333333333333333333333333333333300 10001000011000000011011010100000011101131001311101 10101110001101003300011110110001001001111101103333 33333333
p40m51m1403110101110010111000101000101000101000000113113111 10011011110101100110110011111110111100131000300001 11110301110110113313010001110110100111010101103333 33333333
p40m51m2a03001013311001110011100011110000100100011103103100 00011010031001011011301101100100101000031101311103 11101010101110303310110110010000100000001000103333 33333333
p40m51m313101301011011010000111010011000100100000103013010 10011010010001010010010030101000110000031010311000 00010000010110013311110110101031110110113100013333 33333333
p40m51m403000000111100101101111000000001100101001003003000 10000111001130110010100010100000001001031011301111 00111100100110013300010000100100000110001303003333 33333333
p40m51m503100101110010111000101000101000101001001113113111 10011011100101100110110011101110111100131000301000 10110000110333333313010001110110100101010101103333 33333333
p40m51m813111000010001001000101000000000000011001003113000 11011000000001011011010100000001000000030110300000 01001011010100103311010100110001000010003000013333 33333333
p40m51n113101101011011010000111010011000100100100103013010 10011010010001010010010010301000110010031010311000 00010000010110013311110110101011110111111101013333 33333333
p40m51n1513311110001100101001110301011000011101000113003011 00001000111110100000100001000011011110030100310010 00100011001000103301111111013111111011010010103333 33333333
p40m51n213111000010001001003101000010000000111101303113010 11111100000001011111010110000010000010030111100000 01001011010110103311010100110001003013011000013333 33333333
p40m51n613011111111100101001011111001000001110011013003101 11110000110001111000011011011100010001131010311100 10111011101000003300110111110111111100110100003333 33333333
p40m51n703001013011001010011100011111100110100111103103110 00011010010001010011001111101100111001030011311100 11101010001110103310110111010011100313100001103333 33333333
p40m51n913011011001100001001101110100110110100110003113100 00010010101011011111110111010111011011031100300100 00100000000110113300000000000001001000113000103333 33333333
p40m58m1003000011001010101111100011000111103101100113033110 10001011110110110011110000000100101111031001111101 00010100000111000101110110010300000110001100100011 10301101
p40m58m1303000003030011011111010100110111103101101013033000 30011111011001010111011011110100010100131100100110 11100010101003110101100110010301011001110000101101 00310010
p40m58m1413001010001111001011001011110001111111101103133111 01310103010001011001100110110000100000131111111110 01011101001003100110100000100300001100101000000110 01300001
p40m58m203010010000011111000100100010000010010000003033000 01101111001110100011000000001101110100330111100111 00010101111000001110010100110311111103111031011000 01300011
p40m58m303001010011001110011100011110000103100011103133110 00011010000001011011101101100100101000031001011100 11101010001100101010110110100301100000001000100110 01010010
p40m58m703100011010111101101100101110111003111110103133111 03301000101011110111011111100001011010031101010101 01011101111100111011110001013301001100101013011101 00311001
p40m58m803110111111000011001011000101111013101011003033000 10011000333101000011010110110101000000130111000010 11111111010000101000001101111301110101000110010010 11311101
p40m58n113001011011010111011110010011000100110111013033000 01101111001110101001101131111111000011130111111101 01001101010110001110001011101310100011101011010111 01301001
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