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GrainGenes Marker Report: ABA3

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Locus
ABA3
Type
RFLP
STS
Synonym
SynonymABA003
Chromosome
4H
Chromosome Arm
4HL
Map
Barley-Consensus-4H0.3
Barley-Consensus2-4H51.5
Hordeum-Consensus2006-DArT-4H65.6
Hordeum-StMo-SNP-4H49.95
[ Show Nearby Loci ]
Map Data
Barley consensus
Barley consensus 2
Barley, Consensus 2006, DArT
Barley, Steptoe x Morex, SNP
Probe
ABA3
Reference
ReferenceWenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Remark
Number of populations contributing to the placement of ABA3 in the Barley, Consensus 2006 DArT maps = 1



Probe
ABA3
Locus
ABA3
Xpsr2020(ABA3)-6A
Xpsr2020(ABA3)-6B
Xpsr2020(ABA3)-6D
ABA003
Type
Genomic
PCR
STS
PCR primers
GACCTCCACGAGTTGC
GCTGCGCGCTTCAGCT
Source Species
Hordeum vulgare
Clone Authority
Kleinhofs, Andris
Blake, Tom
Data Source
Kleinhofs, Andris92.09
Blake, Tom95.08.24



Locus for Probe
ABA003
Type
RFLP
Synonym
SynonymABA003
ABA3
Chromosome
4H
Map
Hordeum-Bins-4H51.3
[ Show all 10 ]
[ Show Nearby Loci ]
Map Data
Barley, Abiotic QTL Consensus
[ Show all 10 ]
Probe
ABA003
ABA3
Reference
ReferenceRodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source
Blake, Tom05.04.19
Remark
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex



Locus for Probe
Xpsr2020(ABA3)-6A
Type
RFLP
Chromosome
6A
Species
Triticum aestivum
Probe
ABA3
Reference
ReferenceGulli M et al. (1995) Isolation and characterization of abscisic acid inducible genes in barley seedlings and their responsiveness to environmental stress Life Science Advances-Plant Physiology 14:89-96.
Possible Orthologs
Xpsr2020(ABA3)-6B
Xpsr2020(ABA3)-6D



Locus for Probe
Xpsr2020(ABA3)-6B
Type
RFLP
Chromosome
6B
Species
Triticum aestivum
Probe
ABA3
Reference
ReferenceGulli M et al. (1995) Isolation and characterization of abscisic acid inducible genes in barley seedlings and their responsiveness to environmental stress Life Science Advances-Plant Physiology 14:89-96.
Possible Orthologs
Xpsr2020(ABA3)-6A
Xpsr2020(ABA3)-6D



Locus for Probe
Xpsr2020(ABA3)-6D
Type
RFLP
Chromosome
6D
Species
Triticum aestivum
Probe
ABA3
Reference
ReferenceGulli M et al. (1995) Isolation and characterization of abscisic acid inducible genes in barley seedlings and their responsiveness to environmental stress Life Science Advances-Plant Physiology 14:89-96.
Possible Orthologs
Xpsr2020(ABA3)-6A
Xpsr2020(ABA3)-6B