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GrainGenes Marker Report: ABA4

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Locus
ABA4
Type
RFLP
STS
Synonym
SynonymABA004
Chromosome
1H
Chromosome Arm
1HS
Map
Barley-Consensus-1H-17.2
Barley-Consensus2-1H42.7
Hordeum-StMo-SNP-1H40.03
[ Show Nearby Loci ]
QTL with Locus Marker
QMe.StMo-1H.2
Map Data
Barley consensus
Barley consensus 2
Barley, Steptoe x Morex, SNP
Probe
ABA4
Reference
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.



Probe
ABA4
Locus
ABA004
ABA4
ABA004-1H
Type
PCR
STS
PCR primers
GGGTGGCGTGGGGTG
CCACCAAGCGTGGAGTC
Source Species
Hordeum vulgare
Clone Authority
Kleinhofs, Andris
Blake, Tom
Data Source
Kleinhofs, Andris92.09
Blake, Tom95.08.24



Locus for Probe
ABA004
Type
RFLP
STS
Synonym
SynonymABA004
ABA4
Chromosome
1H
Map
Hordeum-Bins-1H28.6
[ Show all 15 ]
[ Show Nearby Loci ]
Map Data
Barley genes
[ Show all 15 ]
Species
Hordeum vulgare
Probe
ABA004
ABA4
Reference
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceVarshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091.
ReferenceRodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
ReferenceLi JZ et al. (2003) Development and genetic mapping of 127 new microsatellite markers in barley Theoretical and Applied Genetics 107:1021-1027.
Data Source
Blake, Tom05.04.19
Close, Timothy J.
Remark
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex
Locus in 'Barley, Consensus 2007, SSR' mapped in population(s) : Steptoe x Morex



Locus for Probe
ABA004-1H
Map
Hv-SxM-Stein-1H23
[ Show Nearby Loci ]
Map Data
Barley, SxM, Stein2006
Probe
ABA4

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