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GrainGenes Marker Report: ABC154

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Locus
ABC154
Type
RFLP
Synonym
SynonymABC154A
ABC154B
Chromosome
6H
Chromosome Arm
6HL
Map
Barley-consensus-2003-6H94
[ Show all 7 ]
[ Show Nearby Loci ]
Map Data
Barley consensus
[ Show all 7 ]
Probe
ABC154
Reference
ReferenceWenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
Data Source
Langridge, Peter J.
Remark
Number of populations contributing to the placement of ABC154 in the Barley, Consensus 2006 DArT maps = 1
Possible Orthologs
ABC154A
[ Show all 7 ]



Probe
ABC154
Locus
ABC154E
[ Show all 8 ]
Synonym
SynonymHAR35_15892
HAR35_15893
HAR35_49948
External Databases
DDBJ
EMBL
GenBank
Remarks
Steptoe malt cDNA
Type
cDNA
STS
PCR primers
TTC ATT TCA TCG TTT TCA TA
ATC AGG TTC AGC AGT GTT TA
Sequence
L43925
ABC154
ABC154-5
Linkage Group
Group 1
Source Species
Hordeum vulgare
Insert Size
0.3
Clone Vector
pBS
Excision Enzyme
EcoRI
Clone Location
Kleinhofs, Andris
Clone Authority
Blake, Tom
Data Source
Graner, Andreas94.03.08
Blake, Tom95.08.24
ATMI92.09



Locus for Probe
ABC154A
Type
RFLP
Synonym
SynonymABC154
Chromosome
7H
Map
Barley-Consensus2-7H43.9
[ Show all 13 ]
[ Show Nearby Loci ]
Map Data
Barley consensus 2
[ Show all 13 ]
Probe
ABC154
Reference
ReferenceRodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184.
ReferenceWenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source
Blake, Tom05.04.19
Remark
Number of populations contributing to the placement of ABC154A in the Barley, Consensus 2006 DArT maps = 1
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex
Possible Orthologs
ABC154
[ Show all 7 ]



Locus for Probe
ABC154B
Type
RFLP
Synonym
SynonymABC154
Chromosome
7H
Map
Barley-Consensus2-7H81.2
[ Show all 15 ]
[ Show Nearby Loci ]
Map Data
Barley consensus 2
[ Show all 15 ]
Probe
ABC154
Reference
ReferenceRodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184.
ReferenceWenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source
Blake, Tom05.04.19
Close, Timothy J.
Remark
Number of populations contributing to the placement of ABC154B in the Barley, Consensus 2006 DArT maps = 1
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex
Possible Orthologs
ABC154
[ Show all 7 ]



Locus for Probe
ABC154C
Type
RFLP
Chromosome
6H
Map
Hordeum-Bins-6H103
Hordeum-KxM-6H152.1
Hv-Consensus2006-Marcel-6H99.96
Hv-Integrated2009-6H102.6
[ Show Nearby Loci ]
Map Data
Barley, BinMap 2005
Barley, Consensus 2006, Marcel
Barley, Integrated, Marcel 2009
Barley, KxM
Probe
ABC154
Data Source
Kleinhofs, Andris
Remark
This marker is a Binlocus in the Hordeum-Bins maps, i.e. a marker mapped in other crosses and located to the Steptoe x Morex bin
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Igri x Franka
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Igri x Franka
Possible Orthologs
ABC154
[ Show all 7 ]



Locus for Probe
ABC154D
Type
RFLP
Map
Hordeum-KxM-3H58.1
[ Show Nearby Loci ]
Map Data
Barley, KxM
Probe
ABC154
Possible Orthologs
ABC154
[ Show all 7 ]



Locus for Probe
ABC154E
Type
RFLP
Map
Hordeum-KxM-1H142
[ Show Nearby Loci ]
Map Data
Barley, KxM
Probe
ABC154
Possible Orthologs
ABC154
[ Show all 7 ]



Locus for Probe
ABC154F
Type
RFLP
Map
Hordeum-KxM-6H143.8
[ Show Nearby Loci ]
Map Data
Barley, KxM
Probe
ABC154
Possible Orthologs
ABC154
[ Show all 7 ]



Locus for Probe
Xabc154
Type
RFLP
Map
Tm-Dubcovsky2-6A27.9
[ Show Nearby Loci ]
Map Data
T. monococcum, DV92 x G3116
Probe
ABC154
Possible Orthologs
ABC154
[ Show all 7 ]