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GrainGenes Marker Report: ABC310

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Locus
ABC310
Type
RFLP
Synonym
SynonymABC310A
ABC310b
Chromosome
7H
Chromosome Arm
7HL
Map
Barley-Consensus-7H20.4
Hordeum-Bins-7H103.7
Hordeum-GxH-5H251.31
[ Show Nearby Loci ]
QTL with Locus Marker
QMe.SlAl-5H.2
Map Data
Barley consensus
Barley, BinMap 2005
Barley, GxH
Probe
ABC310
Possible Orthologs
ABC310A
[ Show all 16 ]



Probe
ABC310
Locus
ABC310
[ Show all 19 ]
Remarks
Steptoe malt cDNA
Type
cDNA
STS
PCR primers
TCC TGA TGG TCC TCT TAT GC
ACA TAG TTC TCT TCC CAG TA
STS primers
5' CTTCCCTCTCCTTCAAAGGCC
5' CCCGGTTCAAAAAAGAAGAT
STS size
ca. 1500
Amplification Conditions
STS annealing temperature 55-58 oC
Sequence
BQ548064
BQ548065
ABC310
ABC310-5
ABC310-3
Linkage Group
Groups 7 &1
Source Species
Hordeum vulgare
Insert Size
1.6
Clone Vector
pBS
Excision Enzyme
EcoRI
Clone Location
GrainGenes Probe Repository
Kleinhofs, Andris
Clone Authority
Blake, Tom
Data Source
Graner, Andreas94.03.08
Blake, Tom95.08.24
ATMI92.09
Kuenzel, Gottfried00.03



Locus for Probe
abc310-3B
Type
RFLP
Probe
ABC310
Possible Orthologs
ABC310
[ Show all 16 ]



Locus for Probe
Xabc310.2
Type
RFLP
Map
Rye-2009-Consensus-7R82
[ Show Nearby Loci ]
Map Data
Rye_2009_consensus
Probe
ABC310
Possible Orthologs
ABC310
[ Show all 16 ]



Locus for Probe
HD001E21
Probe
ABC310
BJ286927



Locus for Probe
ABC310A
Type
RFLP
Synonym
SynonymABC310
Chromosome
1H
5H
Map
Barley-consensus-2003-1H14
[ Show all 9 ]
[ Show Nearby Loci ]
Map Data
Barley consensus 2
[ Show all 11 ]
Probe
ABC310
Reference
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source
Langridge, Peter J.
Remark
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex
Possible Orthologs
ABC310
[ Show all 16 ]



Locus for Probe
ABC310b
Type
RFLP
SNP
Synonym
SynonymABC310
Chromosome
5H
7H
Chromosome Arm
7HL
Map
Barley-consensus-2003-5H79.5
[ Show all 25 ]
[ Show Nearby Loci ]
Map Data
Barley consensus 2
[ Show all 25 ]
Species
Hordeum vulgare
Probe
ABC310
Reference
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
[ Show all 6 ]
Data Source
Blake, Tom05.04.19
Close, Timothy J.
Langridge, Peter J.
Remark
Number of populations contributing to the placement of ABC310B in the Barley, Consensus 2006 DArT maps = 2
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex,Oregon Wolfe Barleys,Igri x Franka
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex; Oregon Wolfe Dom x Rec; Igri x Franka
Locus in 'Barley, Consensus 2007, SSR' was a BIN marker in 'Barley, Consensus 2006, Marcel'
Possible Orthologs
ABC310
[ Show all 16 ]



Locus for Probe
ABC310b-7H
Type
RFLP
Map
Hv-IxF-Stein-7H123.49
Hv-SxM-Stein-7H94.34
[ Show Nearby Loci ]
Map Data
Barley, IxF, Stein2006
Barley, SxM, Stein2006
Probe
ABC310
Possible Orthologs
ABC310
[ Show all 16 ]



Locus for Probe
Xabc310
Type
RFLP
Chromosome
7R
Chromosome Arm
7RL
Map
Secale-Devos-7R11
[ Show Nearby Loci ]
Map Data
Rye, Ds2 x RxL10
Probe
ABC310
Possible Orthologs
ABC310
[ Show all 16 ]



Locus for Probe
Xabc310-4A
Type
RFLP
Chromosome
4A
Chromosome Arm
4AL
Map
Tm-Dubcovsky2-4A27
[ Show Nearby Loci ]
Map Data
T. monococcum, DV92 x G3116
Species
Triticum aestivum
Probe
ABC310
Reference
ReferenceDevos KM et al. (1995) Elucidation of the 4A/5A/7A translocation in wheat through RFLP mapping. Theoretical and Applied Genetics.
Possible Orthologs
ABC310
[ Show all 16 ]



Locus for Probe
Xabc310-4U
Type
RFLP
Chromosome
4U
Map
Aeumbellulata-Zhang-4100.6
[ Show Nearby Loci ]
Map Data
Ae. umbellulata, A x C
Probe
ABC310
Possible Orthologs
ABC310
[ Show all 16 ]



Locus for Probe
Xabc310-5B
Type
RFLP
Chromosome
5B
Chromosome Arm
5BL
Map
Ta-Synthetic/Opata-5B138.6
Ta-Synthetic/Opata-SSR-5B165.6
[ Show Nearby Loci ]
Map Data
Wheat, Synthetic x Opata  [ GBrowser ]
Wheat, Synthetic x Opata, SSR
Probe
ABC310
Possible Orthologs
ABC310
[ Show all 16 ]



Locus for Probe
Xabc310-5B.1
Type
RFLP
Chromosome
5B
Map
Ta-Synthetic/Opata-BARC-5B153.2
[ Show Nearby Loci ]
Map Data
Wheat, Synthetic x Opata, BARC
Probe
ABC310
Possible Orthologs
ABC310
[ Show all 16 ]



Locus for Probe
Xabc310-5B.2
Type
RFLP
Chromosome
5B
Map
Ta-Synthetic/Opata-BARC-5B143.1
[ Show Nearby Loci ]
Map Data
Wheat, Synthetic x Opata, BARC
Probe
ABC310



Locus for Probe
Xabc310-5S
Type
RFLP
Chromosome
5S
Chromosome Arm
5SL
Map
Aelongissima-Zhang-569.8
[ Show Nearby Loci ]
Map Data
Ae. longissima, YxY
Probe
ABC310
Possible Orthologs
ABC310
[ Show all 16 ]



Locus for Probe
Xabc310-7A
Type
RFLP
Map
Tm-Dubcovsky2-7A0
[ Show Nearby Loci ]
Map Data
T. monococcum, DV92 x G3116
Probe
ABC310
Possible Orthologs
ABC310
[ Show all 16 ]



Locus for Probe
Xabc310-7B
Type
RFLP
Chromosome
7B
Chromosome Arm
7BL
Map
Ta-Synthetic/Opata-7B94.8
Ta-Synthetic/Opata-GPW-7B80.8
Ta-Synthetic/Opata-SSR2-7B82.2
[ Show Nearby Loci ]
Map Data
Wheat, Synthetic x Opata  [ GBrowser ]
Wheat, Synthetic x Opata, GPW
Wheat, Synthetic x Opata, SSR 2
Probe
ABC310
Possible Orthologs
ABC310
[ Show all 16 ]



Locus for Probe
Xabc310.1
Type
RFLP
Chromosome
5B
7R
Chromosome Arm
7RS
Map
Rye-2009-Consensus-7R49.8
Secale-Devos-7R-17.9
Wheat-Composite2004-5B160
[ Show Nearby Loci ]
Map Data
Rye, Ds2 x RxL10
Rye_2009_consensus
Wheat, Composite, 2004
Probe
ABC310
Possible Orthologs
ABC310
[ Show all 16 ]



Locus for Probe
Xabc310a
Type
RFLP
Chromosome Arm
3HL
Map
Hbulbosum-PB1xPB11-332
[ Show Nearby Loci ]
Map Data
H. bulbosum, PB1 x PB11
Probe
ABC310
Possible Orthologs
ABC310
[ Show all 16 ]



Locus for Probe
Xabc310b
Type
RFLP
Chromosome Arm
3HS
Map
Hbulbosum-PB1xPB11-328
[ Show Nearby Loci ]
Map Data
H. bulbosum, PB1 x PB11
Probe
ABC310
Possible Orthologs
ABC310
[ Show all 16 ]

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