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GrainGenes Marker Report: ABC451

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Locus
ABC451
Type
RFLP
STS
Synonym
Synonymeog (Hordeum)
Chromosome
2H
Chromosome Arm
2HL
Map
Barley-consensus-2003-2H74.7
[ Show all 17 ]
[ Show Nearby Loci ]
Map Data
Barley consensus
[ Show all 18 ]
Species
Hordeum vulgare
Probe
ABC451
Associated Gene
eog (Hordeum)
Gene Class
Elongated outer glume awn
Reference
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceVarshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
ReferenceKleinhofs A (1997) Integrating Barley RFLP and Classical Marker Maps: Barley Genetics Newsletter 27:105.
Data Source
Close, Timothy J.
Langridge, Peter J.
Remark
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex
Locus in 'Barley, Consensus 2007, SSR' was a BIN marker in 'Barley, Consensus 2006, Marcel'
Possible Orthologs
ABC451-2H
Xabc451



Gene Associated with Locus
eog (Hordeum)
Full Name
Elongated outer glume
Synonym
Synonyme (Hordeum)
Referencevon Wettstein-Knowles P (1993) Barley (Hordeum vulgare) 2N = 14. Genetic maps : locus maps of complex genomes..
Gene Class
Elongated outer glume awn
Locus
ABC451
eog
URL
http://ace.untamo.net/cgi-bin/ace/tree/default?class=Gene&name=eog+(Hordeum)
Chromosome
2H
BGS Photo
BGS57a, Elongated outer glume  [ BGS Database ]
BGS57b, Elongated outer glume  [ BGS Database ]
Data Source
Franckowiak, Jerome D.96.10



Probe
ABC451
Locus
ABC451
[ Show all 6 ]
Synonym
SynonymHAR35_50743
External Databases
DDBJ
EMBL
GenBank
Remarks
Steptoe leaf cDNA
Type
cDNA
STS
PCR primers
TTC AAC GAG GCA TCA ATC TT
CAG TAA CCA AAA CGA CAA AC
Sequence
L43952
ABC451
Linkage Group
Group 2
2
Source Species
Hordeum vulgare
Source Germplasm
Steptoe (barley)
Source Tissue
leaf
Insert Size
1.3
1.35
Clone Vector
pUC
Excision Enzyme
EcoRI
Clone Location
GrainGenes Probe Repository
Kleinhofs, Andris
Clone Authority
Blake, Tom
Saghai Maroof, M.A.
Data Source
Blake, Tom95.08.24
ATMI92.09
Kleinhofs, Andris96.05.08
Gill, Bikram S.92.09



Locus for Probe
HI004M9
Probe
ABC451



Locus for Probe
ABC451-2H
Type
RFLP
Map
Hv-SxM-Stein-2H71.99
[ Show Nearby Loci ]
Map Data
Barley, SxM, Stein2006
Probe
ABC451
Possible Orthologs
ABC451
Xabc451



Locus for Probe
RI003O23
Probe
ABC451



Locus for Probe
RI048N3
Probe
ABC451



Locus for Probe
Xabc451
Type
RFLP
Map
Tm-Dubcovsky2-2A4.2
[ Show Nearby Loci ]
Map Data
T. monococcum, DV92 x G3116
Probe
ABC451
Remark
In the population 'T. monococcum, DV92 x G3116,' this locus, Xpsr102 and Xcdo588 were mapped with identical restriction fragments, so the corresponding clones are assumed to be homologous.
Possible Orthologs
ABC451
ABC451-2H