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GrainGenes Marker Report: ABG377

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Locus
ABG377
Type
RFLP
Synonym
SynonymABG377
Chromosome
3H
Chromosome Arm
3HL
Map
Barley-Consensus-3H13.3
[ Show all 24 ]
[ Show Nearby Loci ]
QTL with Locus Marker
QGpc.StMo-3H.2
QHd.BlE2-3H.1
QKp.StMo-3H
QTw.StMo-3H
QYld.StMo-3H.1
Map Data
Barley consensus
[ Show all 24 ]
Species
Hordeum vulgare
Probe
ABG377
Reference
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
[ Show all 6 ]
Data Source
Blake, Tom05.04.19
Close, Timothy J.
Remark
Number of populations contributing to the placement of ABG377 in the Barley, Consensus 2006 DArT maps = 2
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex,Oregon Wolfe Barleys,Igri x Franka
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex; Igri x Franka
Locus in 'Barley, Consensus 2007, SSR' was a BIN marker in 'Barley, Consensus 2006, Marcel'
Possible Orthologs
ABG377-3H
Xabg377
Xabg377-3


Probe
ABG377
Locus
ABG377
Xabg377-3
Xabg377
ABG377-3H
Synonym
SynonymHAR35_10264
HAR35_35535
External Databases
DDBJ
EMBL
GenBank
Reference
ReferenceKleinhofs A et al. (1993) A molecular, isozyme and morphological map of the barley (Hordeum vulgare) genome Theoretical and Applied Genetics 86:705-712.
Remarks
Shin Ebisu16 gDNA
Type
Genomic
STS
PCR primers
GTG TTA CAG CCA CCT ATT TC
GCT GCT ATG AGG AGA GAA CC
STS primers
5' CAGAGTTGTTAGGCCTGGAA
5' GACTCTTGGCCCTGCTCCAT
STS size
229
Amplification Conditions
STS annealing temperature 60-62 oC
Sequence
L43984
ABG377
ABG377-5
Linkage Group
3L
3
Source Species
Hordeum vulgare
Source Germplasm
Shin Ebisu 16
Insert Size
0.7
Clone Vector
pGEM
Excision Enzyme
PstI
Clone Location
Kleinhofs, Andris
Clone Authority
Kleinhofs, Andris
Blake, Tom
Lapitan, Nora
Data Source
Graner, Andreas94.03.08
Blake, Tom95.08.24
ATMI92.09
Kleinhofs, Andris96.05.08
Kuenzel, Gottfried00.03


Locus for Probe
ABG377-3H
Type
STS
Map
Hv-SxM-Stein-3H74.07
[ Show Nearby Loci ]
Map Data
Barley, SxM, Stein2006
Probe
ABG377
Possible Orthologs
ABG377
Xabg377
Xabg377-3


Locus for Probe
Xabg377
Type
RFLP
Map
Tm-Dubcovsky2-3A6.7
[ Show Nearby Loci ]
Map Data
T. monococcum, DV92 x G3116
Probe
ABG377
Possible Orthologs
ABG377
ABG377-3H
Xabg377-3


Locus for Probe
Xabg377-3
Type
RFLP
Map
Triticeae-Sorrells-3-update59.6
[ Show Nearby Loci ]
Map Data
Triticeae consensus
Probe
ABG377
Possible Orthologs
ABG377
ABG377-3H
Xabg377

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