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GrainGenes Marker Report: ABG459

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Locus
ABG459
Type
RFLP
STS
Synonym
SynonymABG459
Chromosome
2H
Chromosome Arm
2HS
Map
Barley-Consensus-2H-21.2
[ Show all 15 ]
[ Show Nearby Loci ]
QTL with Locus Marker
QDp.StMo-2H
QGpc.StMo-2H.1
QNb.StMo-2H
QSss.StMo-2H.1
Map Data
Barley consensus
[ Show all 15 ]
Probe
ABG459
Reference
ReferenceWenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
ReferenceRodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source
Blake, Tom05.04.19
Remark
Number of populations contributing to the placement of ABG459 in the Barley, Consensus 2006 DArT maps = 2
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex
Possible Orthologs
Xabg459



Probe
ABG459
Locus
ABG459
Xabg459
Synonym
SynonymHAR35_4128
HAR35_5471
External Databases
DDBJ
EMBL
GenBank
Remarks
Shin Ebisu16 gDNA
Type
Genomic
STS
PCR primers
GCC ACC ACG CTC TCC ATT GT
CCA CGC TCG CTT GCT GAC TC
Sequence
L43997
ABG459
Linkage Group
2S
2
Source Species
Hordeum vulgare
Source Germplasm
Shin Ebisu 16
Insert Size
1.5
1.55
Clone Vector
pGEM
Excision Enzyme
PstI
Clone Location
Kleinhofs, Andris
Clone Authority
Blake, Tom
Saghai Maroof, M.A.
Data Source
Blake, Tom95.08.24
ATMI92.09
Kleinhofs, Andris96.05.08



Locus for Probe
Xabg459
Type
RFLP
Map
Tm-Dubcovsky2-2A-13.9
[ Show Nearby Loci ]
Map Data
T. monococcum, DV92 x G3116
Probe
ABG459
Possible Orthologs
ABG459