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GrainGenes Marker Report: ABG484

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Locus
ABG484
Type
RFLP
Synonym
SynonymABG484
Chromosome
4H
Chromosome Arm
4HS
Map
Barley-Consensus-4H-1.8
[ Show all 17 ]
[ Show Nearby Loci ]
QTL with Locus Marker
QBgsg.StMo-4H
QHt.StMo-4H.2
QNb.StMo-4H
Map Data
Barley consensus
[ Show all 17 ]
Species
Hordeum vulgare
Probe
ABG484
Reference
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceVarshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091.
ReferenceWenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
ReferenceRodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source
Blake, Tom05.04.19
Close, Timothy J.
Remark
Number of populations contributing to the placement of ABG484 in the Barley, Consensus 2006 DArT maps = 2
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex
Locus in 'Barley, Consensus 2007, SSR' was a BIN marker in 'Barley, Consensus 2006, Marcel'
Possible Orthologs
ABG484-4H
Xabg484
Xabg484-4B
abg484
abg484-4B



Probe
ABG484
Locus
ABG484
[ Show all 12 ]
External Databases
DDBJ
EMBL
GenBank
Remarks
Shin Ebisu16 gDNA
Type
Genomic
STS
PCR primers
TAG TTA GAG AGG GAG AAC AA
TAA ATC ACC AAC ATT GAA AC
Sequence
L44033
ABG484
ABG484-5
ABG484-3
Polymorphism
ABG484 XbaI
ABG484 EcoRI
ABG484 EcoRV
ABG484 HindIII
ABG484 DraI
Linkage Group
4L
Source Species
Hordeum vulgare
Insert Size
1.3
Clone Vector
pGEM
Excision Enzyme
PstI
Clone Location
GrainGenes Probe Repository
Kleinhofs, Andris
Clone Authority
Blake, Tom
Image
ABG484 SO autoradiogram
Data Source
Blake, Tom95.08.24
ATMI92.09



Locus for Probe
HD016B16
Probe
ABG484



Locus for Probe
HD083P2
Probe
ABG484



Locus for Probe
HI003L2
Probe
ABG484



Locus for Probe
ABG484-4H
Type
STS
Map
Hv-SxM-Stein-4H56.5
[ Show Nearby Loci ]
Map Data
Barley, SxM, Stein2006
Probe
ABG484
Possible Orthologs
ABG484
Xabg484
Xabg484-4B
abg484
abg484-4B



Locus for Probe
abg484
Type
STS
Map
Wheat, Yr genes and QTL 4B37.4
[ Show Nearby Loci ]
Map Data
Wheat, Yr genes and QTL
Probe
ABG484
Possible Orthologs
ABG484
ABG484-4H
Xabg484
Xabg484-4B
abg484-4B



Locus for Probe
RI002L8
Probe
ABG484



Locus for Probe
RI003C19
Probe
ABG484



Locus for Probe
RI003E18
Probe
ABG484



Locus for Probe
Xabg484
Type
RFLP
STS
Chromosome
4A
4B
Map
Tm-Dubcovsky2-4A0
Wheat-Composite2004-4A57
Wheat-Composite2004-4B24
[ Show Nearby Loci ]
Map Data
T. monococcum, DV92 x G3116
Wheat, Composite, 2004
Probe
ABG484
Remark
In the population 'T. monococcum, DV92 x G3116,' this locus was completely linked to Xpsr327, Xpsr153, Xpsr920, Xbcd1262, Xbcd1006, XksuH8-4A, and Xcdo388-4A. Segregation data are listed under Xbcd327.
Possible Orthologs
ABG484
ABG484-4H
Xabg484-4B
abg484
abg484-4B



Locus for Probe
Xabg484-4B
Type
RFLP
Chromosome
4B
Chromosome Arm
4BL
Map
Ta-Synthetic/Opata-4B20.8
Ta-Synthetic/Opata-BARC-4B17.8
Ta-Synthetic/Opata-DR-4B2.2
Ta-Synthetic/Opata-gbx-4B20.7
Ta-Synthetic/Opata-GPW-4B28.9
[ Show Nearby Loci ]
Map Data
Wheat, Synthetic x Opata  [ GBrowser ]
Wheat, Synthetic x Opata, BARC
Wheat, Synthetic x Opata, DR Genes
Wheat, Synthetic x Opata, gbx RFLP
Wheat, Synthetic x Opata, GPW
Probe
ABG484
Possible Orthologs
ABG484
ABG484-4H
Xabg484
abg484
abg484-4B



Locus for Probe
abg484-4B
Type
RFLP
Chromosome
4B
Probe
ABG484
Possible Orthologs
ABG484
ABG484-4H
Xabg484
Xabg484-4B
abg484