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GrainGenes Marker Report: BARC124

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Probe
BARC124
Locus
Xbarc124b-2A
[ Show all 16 ]
Remarks
Contains motif : (CT)19
BARC primer pairs are developed by P. Cregan, Q. Song and associates at the USDA-ARS Beltsville Agriculture Research Station. Meiotic map information was developed by J.R. Shi, R. Ward and associates at Michigan State University. Deletion map information was developed by B.Gill, S. Singh and associates at Kansas State University. Funding for this research is provided by USDA-ARS in conjunction with the U.S. Wheat and Barley Scab Initiative.
Type
PCR
SSR
PCR primers
5' TGCACCCCTTCCAAATCT 3'
5' TGCGAGTCGTGTGGTTGT 3'
Amplification Conditions
Annealing temperature = 52
Sequence
BV211615
Source Species
Triticum aestivum
Data Source
Ward, Rick



Locus for Probe
barc124
Type
Microsatellite
Map
Durum Wheat, NSGC Lr 2A5.9
Wheat, Yr genes and QTL 2A2
Wheat, Yr genes and QTL 2B12.8
Wheat_Consensus_2014_Ug99_Rust_2A
Wheat_Yr69_2016-2A25.2
[ Show Nearby Loci ]
Map Data
Durum Wheat, NSGC Lr
Wheat, Yr genes and QTL
Wheat_Consensus_2014_Ug99_Rust
Wheat_Yr69_2016
Probe
BARC124
Possible Orthologs
Xbarc124
[ Show all 13 ]



Locus for Probe
YrR61
Type
QTL
Chromosome
2A
Chromosome Arm
2AS
Probe
BARC124
WMS359
Linked QTL
YrR61
Reference
ReferenceHao Y et al. (2011) Characterization of a major QTL for adult plant resistance to stripe rust in US soft winter wheat. Theoretical and Applied Genetics 123:1401-1411.
ReferenceHao Y et al. (2008) Pm23: a new allele of Pm4 located on chromosome 2AL in wheat. Theoretical and Applied Genetics 117:1205-1212.
ReferenceMAS Wheat. Bringing Genomics to the Wheat Fields. Disease Resistance. Stripe Rust Resistance. YrR61 MAS Wheat. Marker Assisted Selection in Wheat.



Locus for Probe
barc124-2A
Type
Microsatellite
Map
Wheat-2014-Consensus-Ug99-Update_2A
[ Show all 6 ]
[ Show Nearby Loci ]
Map Data
Wheat, Yr Update, 2021
Wheat-2014-Consensus-Ug99-Update
Wheat_AB, Colosseo x Lloyd
Wheat_AB_2015_Consensus
Wheat_Yr69_2016
Probe
BARC124
Possible Orthologs
Xbarc124
[ Show all 13 ]



Locus for Probe
Iw2
Type
Trait
Chromosome
2D
Map
Wheat-2008-Corrigin-CS(T2D)-2D6
Wheat-Composite2004-2D9
[ Show Nearby Loci ]
Map Data
Wheat 2008, Corrigin x CS(T2D), C gene
Species
Triticum aestivum
Probe
BARC124
Associated Gene
Iw2 (Triticum)
Gene Class
Glaucousness
Remark
Trait marker Xbarc124-2D
Nearby marker on Composite map: Xbarc124.2
Position on Composite map estimated by GrainGenes.



Locus for Probe
Xbarc124
Type
Microsatellite
Map
Ta-NxW-2A13.6
Wheat, Avalon x Cadenza 2A24.6
Wheat, Avalon x Cadenza 2D10
Wheat_Yr69_2016-2A25.2
[ Show Nearby Loci ]
In QTL
YrR61
Map Data
Wheat, Avalon x Cadenza
Wheat, Nanda2419 x Wangshuibai
Wheat_Yr69_2016
Probe
BARC124
Possible Orthologs
Xbarc124-2A
[ Show all 13 ]



Locus for Probe
Xbarc124-2A
Type
Microsatellite
Chromosome
2A
Map
Chinese_Spring_Deletion_SSR_2A-0.89
T.b.xT.m.-2A25.1
Ta-SSR-2004-2A14.5
Ta-Synthetic/Opata-BARC-2A35.5
Wheat_Yr69_2016-2A25.2
[ Show Nearby Loci ]
Breakpoint Interval
2AS5-0.78-1.00
Map Data
T. boeoticum x monococcum
Wheat, Consensus SSR, 2004
Wheat, Physical, SSR
Wheat, Synthetic x Opata, BARC
Wheat_Yr69_2016
Probe
BARC124
Reference
ReferenceSomers DJ et al. (2004) A high-density wheat microsatellite consensus map for bread wheat (Triticum aestivum L.) Theoretical and Applied Genetics 109:1105-1114.
Possible Orthologs
Xbarc124
[ Show all 13 ]



Locus for Probe
Xbarc124-2B
Type
Microsatellite
Chromosome
2B
Map
Ta-Grandin/BR34-2B99.4
Ta-SSR-2004-2B14.9
[ Show Nearby Loci ]
Map Data
Wheat, Consensus SSR, 2004
Wheat, Grandin x BR34
Probe
BARC124
Reference
ReferenceSomers DJ et al. (2004) A high-density wheat microsatellite consensus map for bread wheat (Triticum aestivum L.) Theoretical and Applied Genetics 109:1105-1114.
Possible Orthologs
Xbarc124
[ Show all 13 ]



Locus for Probe
Xbarc124-2D
Type
Microsatellite
Chromosome
2D
Map
Chinese_Spring_Deletion_SSR_2D-0.735
Louise/Penawawa-2D145.4
Ta-SSR-2004-2D0
Ta-Synthetic/Opata-BARC-2D8.1
[ Show Nearby Loci ]
Breakpoint Interval
2DS5-0.47-1.00
Map Data
Wheat, Consensus SSR, 2004
Wheat, Louise x Penawawa
Wheat, Physical, SSR
Wheat, Synthetic x Opata, BARC
Probe
BARC124
Reference
ReferenceSomers DJ et al. (2004) A high-density wheat microsatellite consensus map for bread wheat (Triticum aestivum L.) Theoretical and Applied Genetics 109:1105-1114.
Possible Orthologs
Xbarc124
[ Show all 13 ]



Locus for Probe
Xbarc124-5A
Type
Microsatellite
Map
T.b.xT.m.-5A147.2
[ Show Nearby Loci ]
Map Data
T. boeoticum x monococcum
Probe
BARC124
Possible Orthologs
Xbarc124
[ Show all 13 ]



Locus for Probe
Xbarc124.1
Type
Microsatellite
Chromosome
2A
Map
Wheat-Composite2004-2A15
Wheat_Yr69_2016-2A25.2
[ Show Nearby Loci ]
Map Data
Wheat, Composite, 2004
Wheat_Yr69_2016
Probe
BARC124
Possible Orthologs
Xbarc124
[ Show all 13 ]



Locus for Probe
Xbarc124.1-2D
Type
Microsatellite
Map
P91193D1/P92201D5-2D0
[ Show Nearby Loci ]
Map Data
Wheat, P91193D1 x P92201D5
Probe
BARC124
Possible Orthologs
Xbarc124
[ Show all 13 ]



Locus for Probe
Xbarc124.2
Type
Microsatellite
Chromosome
2D
Map
Wheat-Composite2004-2D8
[ Show Nearby Loci ]
Map Data
Wheat, Composite, 2004
Probe
BARC124
Possible Orthologs
Xbarc124
[ Show all 13 ]



Locus for Probe
Xbarc124a-2D
Type
Microsatellite
Map
CS/SQ1-2D0
[ Show Nearby Loci ]
Map Data
Wheat, Chinese Spring x SQ1
Probe
BARC124
Possible Orthologs
Xbarc124
[ Show all 13 ]



Locus for Probe
Xbarc124b-2A
Type
Microsatellite
Map
CS/SQ1-2A0
Wheat_Yr69_2016-2A25.2
[ Show Nearby Loci ]
Map Data
Wheat, Chinese Spring x SQ1
Wheat_Yr69_2016
Probe
BARC124
Possible Orthologs
Xbarc124
[ Show all 13 ]



Locus for Probe
Xbarc124c-2B
Type
Microsatellite
Map
CS/SQ1-2B3.3
[ Show Nearby Loci ]
Map Data
Wheat, Chinese Spring x SQ1
Probe
BARC124
Possible Orthologs
Xbarc124
[ Show all 13 ]



Locus for Probe
barc124-2B
Type
Microsatellite
Chromosome
2B
Map
Wheat_Yr_2021-2B42.12
[ Show Nearby Loci ]
In QTL
QHi.OGxM1-2B.1
QSHi.OGxM1-2B.1
Map Data
Wheat, Yr Update, 2021
Probe
BARC124
Possible Orthologs
Xbarc124
[ Show all 13 ]

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