Query (optional)   in Class  

GrainGenes Marker Report: BCD0178b

[ Printable Version ]  [ Submit comment/correction ]

Locus
BCD0178b
Type
RFLP
Map
Saccharum-3324.5
[ Show Nearby Loci ]
Map Data
Saccharum, Cornell
Probe
BCD178
Homology
BAB02292.1e-value: 0.31(AB017071) WD-40 repeat protein-like [Arabidopsis thaliana]
BAB02292.1e-value: 7e-46(AB017071) WD-40 repeat protein-like [Arabidopsis thaliana]
AC008016_1e-value: 1e-53(AC008016) Similar to gb sapiens and contains 3 PF|00400 WD40 domains. EST gb|T45021 comes from this gene. [Arabidopsis thaliana]
Possible Orthologs
BCD0178a
BCD0178c
Xbcd178
Xbcd178-7B
bcd178



Probe for Locus
BCD178
Locus
Xbcd178-7B
[ Show all 9 ]
Synonym
Other nameBC0178
SynonymHAR35_1813
HAR35_1814
Reference
ReferenceHeun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
General Remarks
Lambda ZAP II library
Type
cDNA
Sequence
BE438623
BE438669
BE438758
BCD178_WHE1B0071
BCD178_WHE1B0072
Polymorphism
BCD178 EcoRI
BCD178 EcoRV
Source Species
Hordeum vulgare
Source Germplasm
Willis
Source Tissue
etiolated leaf
PCR size
1.1
Clone Vector
pBluSK
Excision Enzyme
EcoRI
Vector PCR primers
M13forward
M13reverse
Vector Amplification
94 C for 78 sec, 50 C 78 sec, 72 C 120 sec, 25 times; 94 C for 78 sec, 50 C 78 sec, 72 C 5 min, 1 time
Antibiotic
Ampicillin
Clone Location
Sorrells, Mark E.
GrainGenes Probe Repository
Clone Authority
Sorrells, Mark E.
Image
BCD178 SO autoradiogram
Data Source
Sorrells, Mark E.96.07
Sorrells, Mark E.94.10.31