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GrainGenes Marker Report: BCD1072

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Locus
BCD1072
Type
RFLP
Chromosome
1A
1B
1D
5H
Chromosome Arm
1AS
1DS
Map
1D.1R recombinants25.5
[ Show all 6 ]
[ Show Nearby Loci ]
Rearrangement
In segment82-180
[ Show all 6 ]
Map Data
Barley consensus 2003
[ Show all 7 ]
Probe
BCD1072
Data Source
Langridge, Peter J.
Possible Orthologs
BCD1072b
[ Show all 7 ]



Probe
BCD1072
Locus
BCD1072
[ Show all 9 ]
Synonym
SynonymHAR35_1834
Reference
ReferenceHeun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks
Lambda ZAP II library
Bar.LambZAPII [c]
Type
cDNA
Sequence
BQ548071
BCD1072-5
Polymorphism
BCD1072 EcoRI
BCD1072 DraI
BCD1072 EcoRV
BCD1072 HindIII
BCD1072 XbaI
Linkage Group
1S
Insert Enzyme
EcoRI
Source Species
Hordeum vulgare
Source Germplasm
Willis
Source Tissue
etiolated leaf
Insert Size
1.2
PCR size
1.2
Clone Vector
pBluSK
pBluSK-
lambda_Zap
pBS
Excision Enzyme
EcoRI
Vector PCR primers
M13forward
M13reverse
m13reverse 5'AACAGCTATGACCATG
m13forward 5'GTAAAACGACGGCCACT
Vector Amplification
94 C for 78 sec, 50 C 78 sec, 72 C 120 sec, 25 times; 94 C for 78 sec, 50 C 78 sec, 72 C 5 min, 1 time
Antibiotic
Ampicillin
Clone Location
Sorrells, Mark E.
GrainGenes Probe Repository
Clone Authority
Sorrells, Mark E.
Image
BCD1072 BROWS autoradiogram
BCD1072 SO autoradiogram
Data Source
Sorrells, Mark E.96.07
ATMI92.09
Gill, Bikram S.92.09



Locus for Probe
BCD1072b
Type
RFLP
Map
Zea-Ahn-1053.3
Zea-Ahn-561
[ Show Nearby Loci ]
Map Data
Maize, TxCM
Probe
BCD1072
Possible Orthologs
BCD1072
[ Show all 7 ]



Locus for Probe
bcd1072
Type
RFLP
Map
Oat-2002-OxT-QTL_1231.5
Wheat, Yr genes and QTL 1A27.9
[ Show Nearby Loci ]
Map Data
Oat-2002-OxT-QTL
Wheat, Yr genes and QTL
Probe
BCD1072
Possible Orthologs
BCD1072
[ Show all 7 ]



Locus for Probe
RI011C15
Probe
BCD1072



Locus for Probe
Xbcd1072
Type
RFLP
Chromosome
1A
1D
1R
Chromosome Arm
1AS
1DS
1HS
1RS
Map
Avena-Sorrells-A48.8
[ Show all 7 ]
[ Show Nearby Loci ]
Breakpoint Interval
1S-0.50-0.52
Map Data
Diploid Oat, Cornell2
[ Show all 7 ]
Species
Triticum aestivum
Probe
BCD1072
Reference
ReferenceBoyko EV et al. (1999) A high-density genetic linkage map of Aegilops tauschii, the D-genome progenitor of bread wheat. Theoretical and Applied Genetics 99:16-26.
Possible Orthologs
BCD1072
[ Show all 7 ]



Locus for Probe
Xbcd1072-1
Type
RFLP
Chromosome Arm
1S
Map
Triticeae-Sorrells-150.1
[ Show Nearby Loci ]
Map Data
Triticeae consensus
Probe
BCD1072
Possible Orthologs
BCD1072
[ Show all 7 ]



Locus for Probe
Xbcd1072-1A
Type
RFLP
Chromosome
1A
Chromosome Arm
1AS
Map
Ta-Synthetic/Opata-1A55.7
Ta-Synthetic/Opata-BARC-1A41.2
Ta-Synthetic/Opata-DR-1A-0.8
Ta-Synthetic/Opata-GPW-1A50.1
[ Show Nearby Loci ]
Map Data
Wheat, Synthetic x Opata  [ GBrowser ]
Wheat, Synthetic x Opata, BARC
Wheat, Synthetic x Opata, DR Genes
Wheat, Synthetic x Opata, GPW
Probe
BCD1072
Image
BCD1072 SO autoradiogram
Possible Orthologs
BCD1072
[ Show all 7 ]



Locus for Probe
Xbcd1072.1
Type
RFLP
Chromosome
1A
Map
Wheat-Composite2004-1A48
[ Show Nearby Loci ]
Map Data
Wheat, Composite, 2004
Probe
BCD1072
Possible Orthologs
BCD1072
[ Show all 7 ]



Locus for Probe
Xbcd1072.2
Type
RFLP
Chromosome
1A
Map
Wheat-Composite2004-1A52
[ Show Nearby Loci ]
Map Data
Wheat, Composite, 2004
Probe
BCD1072
Possible Orthologs
BCD1072
[ Show all 7 ]

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