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GrainGenes Marker Report: BCD1088

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Locus
BCD1088
Type
RFLP
Synonym
Other namebcd1088
Chromosome
5A
5B
5D
Map
Oat-2009-KxO_16_2339
Oat-2016-Consensus-2458.4
Oat-2016-KxO_1044.3
Oat-2018-Consensus_Mrg2458.4
Oat-KxO/2003-16_2332.5
[ Show Nearby Loci ]
Map Data
Oat, KxO, 2003
[ Show all 6 ]
Species
Avena sativa
Probe
BCD1088
Homology
AAK45383.1e-value: 7.9(AE006993) serine hydroxymethyltransferase [Mycobacterium tuberculosis CDC1551]
G11A_ORYSAe-value: 2e-34PROTEIN KINASE G11A
G11A_ORYSAe-value: 3e-37PROTEIN KINASE G11A
Remark
Marker placement value = 2.07 cM on map Oat-KxO/2003-16_23
Marker is not a framework marker on map Oat-KxO/2003-16_23
Possible Orthologs
Xbcd1088
Xbcd1088-5A
bcd1088



Probe
BCD1088
Locus
Xbcd1088-5A
BCD1088
Xbcd1088
bcd1088
Synonym
SynonymHAR35_6299
Reference
ReferenceHeun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks
Lambda ZAP II library
Bar.LambZAPII [c]
Bar.LambZAPII
Type
cDNA
Sequence
BE438651
BE438713
BE438804
BCD1088_WHE1G0111
BCD1088_WHE1G0112
Polymorphism
BCD1088 EcoRI
BCD1088 EcoRV
BCD1088 DraI
BCD1088 HindIII
BCD1088 XbaI
Linkage Group
5L
Insert Enzyme
EcoRI
Source Species
Hordeum vulgare
Source Germplasm
Willis
Source Tissue
etiolated leaf
Insert Size
1.4
PCR size
1.4
Clone Vector
pBluSK
pBluSK-
BS-SK-
Excision Enzyme
EcoRI
Vector PCR primers
M13forward
M13reverse
Vector Amplification
94 C for 78 sec, 50 C 78 sec, 72 C 120 sec, 25 times; 94 C for 78 sec, 50 C 78 sec, 72 C 5 min, 1 time
Antibiotic
Ampicillin
Clone Location
Sorrells, Mark E.
GrainGenes Probe Repository
Clone Authority
Sorrells, Mark E.
Image
BCD1088 BROWS autoradiogram
BCD1088 KO autoradiogram
BCD1088 SO autoradiogram
Data Source
Sorrells, Mark E.96.07
ATMI92.09



Locus for Probe
bcd1088
Type
RFLP
Map
Wheat, Yr genes and QTL 5A35.8
[ Show Nearby Loci ]
Map Data
Wheat, Yr genes and QTL
Probe
BCD1088
Homology
AAK45383.1e-value: 7.9(AE006993) serine hydroxymethyltransferase [Mycobacterium tuberculosis CDC1551]
G11A_ORYSAe-value: 2e-34PROTEIN KINASE G11A
G11A_ORYSAe-value: 3e-37PROTEIN KINASE G11A
Possible Orthologs
BCD1088
Xbcd1088
Xbcd1088-5A



Locus for Probe
Xbcd1088
Type
RFLP
Chromosome
5A
Map
Avena-Sorrells-E99.3
Oat-KxO-2333.8
Wheat-Composite2004-5A49
[ Show Nearby Loci ]
Map Data
Diploid Oat, Cornell2
Oat, KxO
Wheat, Composite, 2004
Probe
BCD1088
Homology
AAK45383.1e-value: 7.9(AE006993) serine hydroxymethyltransferase [Mycobacterium tuberculosis CDC1551]
G11A_ORYSAe-value: 2e-34PROTEIN KINASE G11A
G11A_ORYSAe-value: 3e-37PROTEIN KINASE G11A
Image
BCD1088 KO autoradiogram
Possible Orthologs
BCD1088
Xbcd1088-5A
bcd1088



Locus for Probe
Xbcd1088-5A
Type
RFLP
Chromosome
5A
Chromosome Arm
5AL
5AS
Map
Ta-Synthetic/Opata-5A37
[ Show all 7 ]
[ Show Nearby Loci ]
Map Data
T. turgidum, Messapia x dicoccoides
[ Show all 7 ]
Probe
BCD1088
Homology
AAK45383.1e-value: 7.9(AE006993) serine hydroxymethyltransferase [Mycobacterium tuberculosis CDC1551]
G11A_ORYSAe-value: 2e-34PROTEIN KINASE G11A
G11A_ORYSAe-value: 3e-37PROTEIN KINASE G11A
Image
BCD1088 SO autoradiogram
Possible Orthologs
BCD1088
Xbcd1088
bcd1088