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GrainGenes Marker Report: BCD115

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Locus
BCD115
Type
RFLP
Chromosome
1A
1B
1D
Chromosome Arm
1AL
1BL
1DL
Map
1D.1R recombinants-39.3
[ Show Nearby Loci ]
Rearrangement
In segmentRL-1
Not in segment82-180
WR-4
WR-5
R1
Map Data
Wheat chromosome arm map
Wheat.Rye recombinant
Probe
BCD115
Homology
AAB88617.1e-value: 4e-53(AF034946) ubiquitin conjugating enzyme [Zea mays]
UBC4_LYCESe-value: 0.079UBIQUITIN-CONJUGATING ENZYME E2-17 KD (UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER PROTEIN)
T01354e-value: 5e-19herbicide safener binding protein 1 - maize
T01354e-value: 5e-23herbicide safener binding protein 1 - maize
Possible Orthologs
bcd115a
[ Show all 15 ]



Probe
BCD115
Locus
Xbcd115-3D
[ Show all 23 ]
Reference
ReferenceHeun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks
Lambda ZAP II library
Bar.LambZAPII [c]
Type
cDNA
Sequence
BE438608
[ Show all 9 ]
Polymorphism
BCD115 EcoRI
BCD115 EcoRV
BCD115 DraI
BCD115 HindIII
Linkage Group
1L, 3L
Insert Enzyme
EcoRI
Source Species
Hordeum vulgare
Source Germplasm
Willis
Source Tissue
etiolated leaf
Insert Size
0.9
PCR size
0.9
Clone Vector
pBluSK
pBluSK-
Excision Enzyme
EcoRI
Vector PCR primers
M13forward
M13reverse
Vector Amplification
94 C for 78 sec, 50 C 78 sec, 72 C 120 sec, 25 times; 94 C for 78 sec, 50 C 78 sec, 72 C 5 min, 1 time
Antibiotic
Ampicillin
Clone Location
Sorrells, Mark E.
GrainGenes Probe Repository
Clone Authority
Sorrells, Mark E.
Image
BCD115 KO autoradiogram
BCD115 SO autoradiogram
Data Source
Sorrells, Mark E.96.07
ATMI92.09



Locus for Probe
bcd115x
Type
RFLP
Map
Oat-2004-TxM_3032
[ Show Nearby Loci ]
In QTL
QOL-H.TxM-30
Map Data
Oat-2004-TxM
Species
Avena sativa
Probe
BCD115
Homology
AAB88617.1e-value: 4e-53(AF034946) ubiquitin conjugating enzyme [Zea mays]
UBC4_LYCESe-value: 0.079UBIQUITIN-CONJUGATING ENZYME E2-17 KD (UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER PROTEIN)
T01354e-value: 5e-19herbicide safener binding protein 1 - maize
T01354e-value: 5e-23herbicide safener binding protein 1 - maize
Possible Orthologs
BCD115
[ Show all 15 ]



Locus for Probe
bcd115a
Type
RFLP
Map
Oat-KxO/2003-3+3873.9
[ Show Nearby Loci ]
Map Data
Oat, KxO, 2003
Probe
BCD115
Homology
AAB88617.1e-value: 4e-53(AF034946) ubiquitin conjugating enzyme [Zea mays]
UBC4_LYCESe-value: 0.079UBIQUITIN-CONJUGATING ENZYME E2-17 KD (UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER PROTEIN)
T01354e-value: 5e-19herbicide safener binding protein 1 - maize
T01354e-value: 5e-23herbicide safener binding protein 1 - maize
Remark
Marker placement value = 4.60 cM on map Oat-KxO/2003-3+38
Marker is not a framework marker on map Oat-KxO/2003-3+38
Possible Orthologs
BCD115
[ Show all 15 ]



Locus for Probe
BCD115B
Type
RFLP
Chromosome
3A
3B
3D
Chromosome Arm
3AL
3BL
3DL
Map
Oat-2001-KxO_2292
Oat-2009-KxO_22_44_1874
Oat-2016-Consensus-20196.3
Oat-2018-Consensus_Mrg20196.3
Oat-KxO/2003-22_44+1866.2
[ Show Nearby Loci ]
Map Data
Oat, KxO, 2003
[ Show all 6 ]
Species
Avena sativa
Probe
BCD115
Homology
AAB88617.1e-value: 4e-53(AF034946) ubiquitin conjugating enzyme [Zea mays]
UBC4_LYCESe-value: 0.079UBIQUITIN-CONJUGATING ENZYME E2-17 KD (UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER PROTEIN)
T01354e-value: 5e-19herbicide safener binding protein 1 - maize
T01354e-value: 5e-23herbicide safener binding protein 1 - maize
Remark
Marker placement value = 3.61 cM on map Oat-KxO/2003-22_44+18
Marker is not a framework marker on map Oat-KxO/2003-22_44+18
Possible Orthologs
BCD115
[ Show all 15 ]



Locus for Probe
bcd115c
Type
RFLP
Map
Oat-KxO/2003-1550.6
[ Show Nearby Loci ]
Map Data
Oat, KxO, 2003
Probe
BCD115
Homology
AAB88617.1e-value: 4e-53(AF034946) ubiquitin conjugating enzyme [Zea mays]
UBC4_LYCESe-value: 0.079UBIQUITIN-CONJUGATING ENZYME E2-17 KD (UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER PROTEIN)
T01354e-value: 5e-19herbicide safener binding protein 1 - maize
T01354e-value: 5e-23herbicide safener binding protein 1 - maize
Remark
Marker placement value = 8.50 cM on map Oat-KxO/2003-15
Marker is not a framework marker on map Oat-KxO/2003-15
Possible Orthologs
BCD115
[ Show all 15 ]



Locus for Probe
BCD115C
Type
RFLP
Synonym
Other namebcd115c
Map
Oat-2009-KxO_1547
Oat-2016-Consensus-1523.6
Oat-2016-KxO_8102.6
Oat-2018-Consensus_Mrg1523.6
[ Show Nearby Loci ]
Map Data
Oat-2009-KxO
Oat-2016-Consensus
Oat-2016-KxO
Oat-2018-Consensus
Species
Avena sativa
Probe
BCD115
Homology
AAB88617.1e-value: 4e-53(AF034946) ubiquitin conjugating enzyme [Zea mays]
UBC4_LYCESe-value: 0.079UBIQUITIN-CONJUGATING ENZYME E2-17 KD (UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER PROTEIN)
T01354e-value: 5e-19herbicide safener binding protein 1 - maize
T01354e-value: 5e-23herbicide safener binding protein 1 - maize
Possible Orthologs
BCD115
[ Show all 15 ]



Locus for Probe
BCD115A
Type
RFLP
Synonym
Other namebcd115a
Map
Oat-2001-KxO-QTL_3-38133.75
Oat-2001-KxO_3-38133.75
Oat-2009-KxO_1_3_38_break0
Oat-2016-Consensus-1869.7
Oat-2018-Consensus_Mrg1869.7
[ Show Nearby Loci ]
Map Data
Oat-2001-KxO
Oat-2001-KxO-QTL
Oat-2009-KxO
Oat-2016-Consensus
Oat-2018-Consensus
Species
Avena sativa
Probe
BCD115
Homology
AAB88617.1e-value: 4e-53(AF034946) ubiquitin conjugating enzyme [Zea mays]
UBC4_LYCESe-value: 0.079UBIQUITIN-CONJUGATING ENZYME E2-17 KD (UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER PROTEIN)
T01354e-value: 5e-19herbicide safener binding protein 1 - maize
T01354e-value: 5e-23herbicide safener binding protein 1 - maize
Possible Orthologs
BCD115
[ Show all 15 ]



Locus for Probe
HD030G18
Probe
BCD115
Homology
AAB88617.1e-value: 4e-53(AF034946) ubiquitin conjugating enzyme [Zea mays]
UBC4_LYCESe-value: 0.079UBIQUITIN-CONJUGATING ENZYME E2-17 KD (UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER PROTEIN)
T01354e-value: 5e-19herbicide safener binding protein 1 - maize
T01354e-value: 5e-23herbicide safener binding protein 1 - maize



Locus for Probe
HD054G3
Probe
BCD115
Homology
AAB88617.1e-value: 4e-53(AF034946) ubiquitin conjugating enzyme [Zea mays]
UBC4_LYCESe-value: 0.079UBIQUITIN-CONJUGATING ENZYME E2-17 KD (UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER PROTEIN)
T01354e-value: 5e-19herbicide safener binding protein 1 - maize
T01354e-value: 5e-23herbicide safener binding protein 1 - maize



Locus for Probe
HD069G5
Probe
BCD115
Homology
AAB88617.1e-value: 4e-53(AF034946) ubiquitin conjugating enzyme [Zea mays]
UBC4_LYCESe-value: 0.079UBIQUITIN-CONJUGATING ENZYME E2-17 KD (UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER PROTEIN)
T01354e-value: 5e-19herbicide safener binding protein 1 - maize
T01354e-value: 5e-23herbicide safener binding protein 1 - maize



Locus for Probe
HI054G3
Probe
BCD115
Homology
AAB88617.1e-value: 4e-53(AF034946) ubiquitin conjugating enzyme [Zea mays]
UBC4_LYCESe-value: 0.079UBIQUITIN-CONJUGATING ENZYME E2-17 KD (UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER PROTEIN)
T01354e-value: 5e-19herbicide safener binding protein 1 - maize
T01354e-value: 5e-23herbicide safener binding protein 1 - maize



Locus for Probe
HI069G5
Probe
BCD115
Homology
AAB88617.1e-value: 4e-53(AF034946) ubiquitin conjugating enzyme [Zea mays]
UBC4_LYCESe-value: 0.079UBIQUITIN-CONJUGATING ENZYME E2-17 KD (UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER PROTEIN)
T01354e-value: 5e-19herbicide safener binding protein 1 - maize
T01354e-value: 5e-23herbicide safener binding protein 1 - maize



Locus for Probe
bcd115
Type
RFLP
Map
Oat-2003-OglexMAM17-5_830
Oat-2004-OxM-QTL4_828.5
Oat-2006-LAG211_820
Wheat, Yr genes and QTL 3A53.5
[ Show Nearby Loci ]
Map Data
Oat-2003-OglexMAM17-5
Oat-2004-OxM-QTL4
Oat-2006-LAG211
Wheat, Yr genes and QTL
Probe
BCD115
Homology
AAB88617.1e-value: 4e-53(AF034946) ubiquitin conjugating enzyme [Zea mays]
UBC4_LYCESe-value: 0.079UBIQUITIN-CONJUGATING ENZYME E2-17 KD (UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER PROTEIN)
T01354e-value: 5e-19herbicide safener binding protein 1 - maize
T01354e-value: 5e-23herbicide safener binding protein 1 - maize
Possible Orthologs
BCD115
[ Show all 15 ]



Locus for Probe
RI026E21
Probe
BCD102
BCD115
Homology
AAB88617.1e-value: 4e-53(AF034946) ubiquitin conjugating enzyme [Zea mays]
[ Show all 7 ]



Locus for Probe
RI034B12
Probe
BCD115
Homology
AAB88617.1e-value: 4e-53(AF034946) ubiquitin conjugating enzyme [Zea mays]
UBC4_LYCESe-value: 0.079UBIQUITIN-CONJUGATING ENZYME E2-17 KD (UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER PROTEIN)
T01354e-value: 5e-19herbicide safener binding protein 1 - maize
T01354e-value: 5e-23herbicide safener binding protein 1 - maize



Locus for Probe
Xbcd115
Type
RFLP
Chromosome
1R
3A
4R
Chromosome Arm
1RL
4RS
Map
Oat-2003-OglexMAM17-5_830
[ Show all 7 ]
[ Show Nearby Loci ]
Map Data
Oat-2003-OglexMAM17-5
[ Show all 6 ]
Probe
BCD115
Homology
AAB88617.1e-value: 4e-53(AF034946) ubiquitin conjugating enzyme [Zea mays]
UBC4_LYCESe-value: 0.079UBIQUITIN-CONJUGATING ENZYME E2-17 KD (UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER PROTEIN)
T01354e-value: 5e-19herbicide safener binding protein 1 - maize
T01354e-value: 5e-23herbicide safener binding protein 1 - maize
Remark
Mapped at LOD <3.5.
Possible Orthologs
BCD115
[ Show all 15 ]



Locus for Probe
Xbcd115-3
Type
RFLP
Chromosome Arm
3L
Map
Triticeae-Sorrells-377.6
[ Show Nearby Loci ]
In QTL
QMly.ScYa-7D
Map Data
Triticeae consensus
Probe
BCD115
Homology
AAB88617.1e-value: 4e-53(AF034946) ubiquitin conjugating enzyme [Zea mays]
UBC4_LYCESe-value: 0.079UBIQUITIN-CONJUGATING ENZYME E2-17 KD (UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER PROTEIN)
T01354e-value: 5e-19herbicide safener binding protein 1 - maize
T01354e-value: 5e-23herbicide safener binding protein 1 - maize
Possible Orthologs
BCD115
[ Show all 15 ]



Locus for Probe
Xbcd115-3A
Type
RFLP
Chromosome
3A
Chromosome Arm
3AL
3AS
Map
3A-SxY212
[ Show all 7 ]
[ Show Nearby Loci ]
In QTL
QMly.ScYa-3A
Map Data
3A, SxY, QTL
[ Show all 7 ]
Species
Triticum aestivum
Probe
BCD115
Homology
AAB88617.1e-value: 4e-53(AF034946) ubiquitin conjugating enzyme [Zea mays]
UBC4_LYCESe-value: 0.079UBIQUITIN-CONJUGATING ENZYME E2-17 KD (UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER PROTEIN)
T01354e-value: 5e-19herbicide safener binding protein 1 - maize
T01354e-value: 5e-23herbicide safener binding protein 1 - maize
Image
BCD115 SO autoradiogram
Reference
ReferenceOtto CD et al. (2002) Genetic dissection of a major Fusarium head blight QTL in tetraploid wheat Plant Molecular Biology 48:625-632.
ReferenceParker GD et al. (1999) Mapping loci associated with milling yield in wheat (Triticum aestivum L.) Molecular Breeding 5:561-568.
Possible Orthologs
BCD115
[ Show all 15 ]



Locus for Probe
Xbcd115-3B
Type
RFLP
Chromosome
3B
Chromosome Arm
3BL
Map
Tturgidum-JKxC-3B125.3
Tturgidum-JKxC2-3B121.8
[ Show Nearby Loci ]
Map Data
T. turgidum, JK x Cham1
T. turgidum, JK x Cham1, 2
Probe
BCD115
Homology
AAB88617.1e-value: 4e-53(AF034946) ubiquitin conjugating enzyme [Zea mays]
UBC4_LYCESe-value: 0.079UBIQUITIN-CONJUGATING ENZYME E2-17 KD (UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER PROTEIN)
T01354e-value: 5e-19herbicide safener binding protein 1 - maize
T01354e-value: 5e-23herbicide safener binding protein 1 - maize
Possible Orthologs
BCD115
[ Show all 15 ]



Locus for Probe
Xbcd115-3D
Type
RFLP
Chromosome
3D
Chromosome Arm
3DL
Species
Triticum aestivum
Probe
BCD115
ReferenceAnderson JA et al. (1992) Development of a chromosomal arm map for wheat based on RFLP markers. Theoretical and Applied Genetics 83:1035-1043.
BCD115
ReferenceMa Z-Q et al. (1993) RFLP markers linked to two Hessian fly-resistance genes in wheat (Triticum aestivum L.) from Triticum tauschii (coss.) Schmal. Theoretical and Applied Genetics 85:750-754.
Homology
AAB88617.1e-value: 4e-53(AF034946) ubiquitin conjugating enzyme [Zea mays]
UBC4_LYCESe-value: 0.079UBIQUITIN-CONJUGATING ENZYME E2-17 KD (UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER PROTEIN)
T01354e-value: 5e-19herbicide safener binding protein 1 - maize
T01354e-value: 5e-23herbicide safener binding protein 1 - maize
Reference
ReferenceMa Z-Q et al. (1993) RFLP markers linked to two Hessian fly-resistance genes in wheat (Triticum aestivum L.) from Triticum tauschii (coss.) Schmal. Theoretical and Applied Genetics 85:750-754.
Possible Orthologs
BCD115
[ Show all 15 ]



Locus for Probe
Xbcd115A
Type
RFLP
Map
Oat-2001-KxO-QTL_3-38133.75
Oat-2001-KxO_3-38133.75
Oat-KxO-335.3
Oat-KxO/AFLP-338
Oat-KxO/Q-335.3
[ Show Nearby Loci ]
In QTL
Height, KxO-3-b
Map Data
Oat, KxO
Oat, KxO, AFLP
Oat, KxO/QTL
Oat-2001-KxO
Oat-2001-KxO-QTL
Probe
BCD115
Homology
AAB88617.1e-value: 4e-53(AF034946) ubiquitin conjugating enzyme [Zea mays]
UBC4_LYCESe-value: 0.079UBIQUITIN-CONJUGATING ENZYME E2-17 KD (UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER PROTEIN)
T01354e-value: 5e-19herbicide safener binding protein 1 - maize
T01354e-value: 5e-23herbicide safener binding protein 1 - maize
Image
BCD115 KO autoradiogram
Reference
ReferenceJin H et al. (2000) Combined AFLP and RFLP mapping in two hexaploid oat recombinant inbred populations Genome 94-101.
Possible Orthologs
BCD115
[ Show all 15 ]



Locus for Probe
Xbcd115B
Type
RFLP
Map
Oat-2001-KxO_2292
Oat-KxO-22106.7
[ Show Nearby Loci ]
Map Data
Oat, KxO
Oat-2001-KxO
Probe
BCD115
Homology
AAB88617.1e-value: 4e-53(AF034946) ubiquitin conjugating enzyme [Zea mays]
UBC4_LYCESe-value: 0.079UBIQUITIN-CONJUGATING ENZYME E2-17 KD (UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER PROTEIN)
T01354e-value: 5e-19herbicide safener binding protein 1 - maize
T01354e-value: 5e-23herbicide safener binding protein 1 - maize
Image
BCD115 KO autoradiogram
Possible Orthologs
BCD115
[ Show all 15 ]



Locus for Probe
bcd115-3A
Type
RFLP
Chromosome
3A
Map
Wheat_Yr_2021-3A115.71
[ Show Nearby Loci ]
Map Data
Wheat, Yr Update, 2021
Probe
BCD115
Homology
AAB88617.1e-value: 4e-53(AF034946) ubiquitin conjugating enzyme [Zea mays]
UBC4_LYCESe-value: 0.079UBIQUITIN-CONJUGATING ENZYME E2-17 KD (UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER PROTEIN)
T01354e-value: 5e-19herbicide safener binding protein 1 - maize
T01354e-value: 5e-23herbicide safener binding protein 1 - maize
Possible Orthologs
BCD115
[ Show all 15 ]

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