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GrainGenes Marker Report: BCD1338

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Locus
BCD1338
Type
RFLP
Chromosome
7A
7B
7D
Chromosome Arm
7AS
7BS
Map Data
Wheat chromosome arm map
Probe
BCD1338
Possible Orthologs
bcd1338a
[ Show all 9 ]



Probe
BCD1338
Locus
Xbcd1338A
[ Show all 15 ]
Reference
ReferenceHeun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks
Lambda ZAP II library
Bar.LambZAPII [c]
Bar.LambZAPII
Type
cDNA
Polymorphism
BCD1338 EcoRI
BCD1338 DraI
BCD1338 EcoRV
BCD1338 HindIII
Linkage Group
7S
Insert Enzyme
EcoRI
Source Species
Hordeum vulgare
Source Germplasm
Willis
Source Tissue
etiolated leaf
Insert Size
0.5
PCR size
1.4
Clone Vector
pBluSK
pBluSK-
BS-SK-
Excision Enzyme
EcoRI
Vector PCR primers
M13forward
M13reverse
Vector Amplification
94 C for 78 sec, 50 C 78 sec, 72 C 120 sec, 25 times; 94 C for 78 sec, 50 C 78 sec, 72 C 5 min, 1 time
Antibiotic
Ampicillin
Clone Location
Sorrells, Mark E.
GrainGenes Probe Repository
Clone Authority
Sorrells, Mark E.
Image
BCD1338 BROWS autoradiogram
BCD1338 KO autoradiogram
BCD1338 SO autoradiogram
Data Source
Sorrells, Mark E.96.07
ATMI92.09



Locus for Probe
bcd1338a
Type
RFLP
Map
Oat-2004-TxM_4_1610
Oat-KxO/2003-3221.1
RGA-2013_KO3221
[ Show Nearby Loci ]
Map Data
Oat, KxO, 2003
Oat-2004-TxM
Oat-2013-KxO-RGA
Probe
BCD1338
Remark
Marker placement value = 0.00 cM on map Oat-KxO/2003-32
Marker is a framework marker on map Oat-KxO/2003-32
Possible Orthologs
BCD1338
[ Show all 9 ]



Locus for Probe
bcd1338b
Type
RFLP
Map
Oat-KxO/2003-1716.6
[ Show Nearby Loci ]
Map Data
Oat, KxO, 2003
Probe
BCD1338
Remark
Marker placement value = 2.21 cM on map Oat-KxO/2003-17
Marker is not a framework marker on map Oat-KxO/2003-17
Possible Orthologs
BCD1338
[ Show all 9 ]



Locus for Probe
BCD1338B
Type
RFLP
Synonym
Other namebcd1338b
Map
Oat-2009-KxO_1741
Oat-2016-Consensus-273.3
Oat-2018-Consensus_Mrg0273.3
[ Show Nearby Loci ]
Map Data
Oat-2009-KxO
Oat-2016-Consensus
Oat-2018-Consensus
Species
Avena sativa
Avena sativa L.
Probe
BCD1338
Possible Orthologs
BCD1338
[ Show all 9 ]



Locus for Probe
BCD1338A
Type
RFLP
Synonym
Other namebcd1338a
Map
Oat-2001-KxO_25-3231.75
Oat-2009-KxO_3225
Oat-2016-Consensus-3109.8
Oat-2018-Consensus_Mrg03109.8
[ Show Nearby Loci ]
Map Data
Oat-2001-KxO
Oat-2009-KxO
Oat-2016-Consensus
Oat-2018-Consensus
Species
Avena sativa
Avena sativa L.
Probe
BCD1338
Possible Orthologs
BCD1338
[ Show all 9 ]



Locus for Probe
HD005G20
Probe
BCD1338



Locus for Probe
HD014B1
Probe
BCD1338



Locus for Probe
HD023H7
Probe
BCD1338



Locus for Probe
bcd1338
Type
RFLP
Map
Oat-2003-OglexMAM17-5_1034
Wheat, Yr genes and QTL 7B25.7
Wheat_Yr_2021-7B49.72
[ Show Nearby Loci ]
Map Data
Oat-2003-OglexMAM17-5
Wheat, Yr genes and QTL
Wheat, Yr Update, 2021
Probe
BCD1338
Possible Orthologs
BCD1338
[ Show all 9 ]



Locus for Probe
RI025G18
Probe
BCD1338



Locus for Probe
RI046H4
Probe
BCD1338



Locus for Probe
Xbcd1338
Type
RFLP
Chromosome
7B
7D
Chromosome Arm
7DS
Map
Oat-2003-OglexMAM17-5_1034
Ta-Physical-Gill-7ABD-32
Wheat-Composite2004-7B42
[ Show Nearby Loci ]
Breakpoint Interval
7S-0.26-0.37
Map Data
Oat-2003-OglexMAM17-5
Wheat, Composite, 2004
Wheat, Physical
Species
Triticum aestivum
Probe
BCD1338
Reference
ReferenceBoyko EV et al. (1999) A high-density genetic linkage map of Aegilops tauschii, the D-genome progenitor of bread wheat. Theoretical and Applied Genetics 99:16-26.
Possible Orthologs
BCD1338
[ Show all 9 ]



Locus for Probe
Xbcd1338-7B
Type
RFLP
Chromosome
7B
Chromosome Arm
7BS
Map
Ta-Synthetic/Opata-7B36.2
Ta-Synthetic/Opata-BARC-7B32.2
Ta-Synthetic/Opata-GPW-7B28.4
[ Show Nearby Loci ]
Map Data
Wheat, Synthetic x Opata  [ GBrowser ]
Wheat, Synthetic x Opata, BARC
Wheat, Synthetic x Opata, GPW
Probe
BCD1338
Possible Orthologs
BCD1338
[ Show all 9 ]



Locus for Probe
Xbcd1338A
Type
RFLP
Map
Oat-2001-KxO_25-3231.75
Oat-KxO-3216.5
Oat-KxO/AFLP-25-3248
Oat-KxO/Q-3216.4
[ Show Nearby Loci ]
In QTL
Height, KxO-32-b
Height, KxO-32-c
Test weight, KxO-32-a
Test weight, KxO-32-b
Map Data
Oat, KxO
Oat, KxO, AFLP
Oat, KxO/QTL
Oat-2001-KxO
Probe
BCD1338
Image
BCD1338 KO autoradiogram
Reference
ReferenceJin H et al. (2000) Combined AFLP and RFLP mapping in two hexaploid oat recombinant inbred populations Genome 94-101.
Possible Orthologs
BCD1338
[ Show all 9 ]



Locus for Probe
Xbcd1338B
Type
RFLP
Map
Oat-KxO-1718
[ Show Nearby Loci ]
Map Data
Oat, KxO
Probe
BCD1338
Image
BCD1338 KO autoradiogram
Possible Orthologs
BCD1338
[ Show all 9 ]

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