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GrainGenes Marker Report: BCD1340

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Locus
bcd1340
Type
RFLP
SNP
Synonym
SynonymPOPA1_0814
Map
Oat-KxO/2003-689.3
[ Show Nearby Loci ]
Map Data
Oat, KxO, 2003
Probe
BCD1340
Homology
NP_059016.1e-value: 3.0cathepsin S [Rattus norvegicus]
AF266280_2e-value: 0.048(AF266280) mitogaligin [Homo sapiens]
Remark
Marker placement value = 3.28 cM on map Oat-KxO/2003-6
Marker is not a framework marker on map Oat-KxO/2003-6
The RFLP marker was advanced to the POPA1 SNP collection.
Possible Orthologs
Xbcd1340
BCD1340



Probe
BCD1340
Locus
Xbcd1340
bcd1340
BCD1340
Synonym
SynonymHAR35_328
HAR35_455
HAR35_50552
HAR35_515
Reference
ReferenceHeun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks
Lambda ZAP II library
Type
cDNA
Sequence
BE438656
BE438815
BCD1340_WHE1H0121
BCD1340_WHE1H0122
Polymorphism
BCD1340 EcoRI
Source Species
Hordeum vulgare
Source Germplasm
Willis
Source Tissue
etiolated leaf
PCR size
1.3
Clone Vector
pBluSK
Excision Enzyme
EcoRI
Vector PCR primers
M13forward
M13reverse
Vector Amplification
94 C for 78 sec, 50 C 78 sec, 72 C 120 sec, 25 times; 94 C for 78 sec, 50 C 78 sec, 72 C 5 min, 1 time
Antibiotic
Ampicillin
Clone Location
Sorrells, Mark E.
GrainGenes Probe Repository
Clone Authority
Sorrells, Mark E.
Image
BCD1340 KO autoradiogram
Data Source
Sorrells, Mark E.96.07



Locus for Probe
BCD1340
Type
RFLP
Synonym
Other namebcd1340
Map
Oat-2009-KxO_695
Oat-2016-Consensus-129.2
Oat-2016-KxO_5130
Oat-2018-Consensus_Mrg129.2
[ Show Nearby Loci ]
Map Data
Oat-2009-KxO
Oat-2016-Consensus
Oat-2016-KxO
Oat-2018-Consensus
Species
Avena sativa
Probe
BCD1340
Homology
NP_059016.1e-value: 3.0cathepsin S [Rattus norvegicus]
AF266280_2e-value: 0.048(AF266280) mitogaligin [Homo sapiens]
Possible Orthologs
bcd1340
Xbcd1340



Locus for Probe
Xbcd1340
Type
RFLP
Map
Avena-Sorrells-A35.3
Oat-KxO-612.7
[ Show Nearby Loci ]
Map Data
Diploid Oat, Cornell2
Oat, KxO
Probe
BCD1340
Homology
NP_059016.1e-value: 3.0cathepsin S [Rattus norvegicus]
AF266280_2e-value: 0.048(AF266280) mitogaligin [Homo sapiens]
Image
BCD1340 KO autoradiogram
Possible Orthologs
bcd1340
BCD1340